Array 1 25597-24832 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRL01000102.1 Methylobacterium indicum strain NS228 contig_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25596 29 100.0 32 ............................. CTTGCTCGCGGTCGATAGGGAGTAGGGCGACG 25535 29 100.0 32 ............................. CGGATCGTCGCCGGGTCGATCACCACCGACCG 25474 29 100.0 32 ............................. CAGTTCGTCAGCTCGGTCGCCGTCAGCACCAC 25413 29 100.0 32 ............................. TCCTTCACCGCCTCGCCGATCTTCTCGCGCAT 25352 29 100.0 32 ............................. GGCGTATCAGTGGCAGACCGGTATCGACTGCC 25291 29 100.0 33 ............................. AGGGGTACGCACGACTACGCAGCGGCTAACACG 25229 29 96.6 32 ............................G TCTTCGAGATCCTGGACCCCGAGCGGCTGGCG 25168 29 96.6 32 ............................T TTCGCGCAGAACGCCGACATGTCGTCGGGCAC 25107 29 100.0 32 ............................. CCGGGCAAGGCTGTGGTGCAGGGCGCGCACGC 25046 29 100.0 32 ............................. TTCGGGATGAACCAAGTCGGCGACCCATCGCT 24985 29 96.6 32 ..............G.............. GATCACTGCGGCAGAGGCTCAAGCAATCTGTC 24924 29 96.6 32 .............C............... GCGACCTTCACCAGGATCAACACGCAGCTCGG 24863 29 79.3 0 A.T........C.C...........T..G | TA,G [24836,24849] ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.4 32 GGCTCCCCCGCACTCGCGGGGATCGACCC # Left flank : CCGCATCGAGGCCCTGCCACCACACCGGCCGGCGGCGGGGAAAGCCCTTCACGTCCTCGCGCCGCAGGGGCGGCAGGTGCTCGCCGAAGCGCTGGCGATACGCGGCGTAGAGGTCGTCGCGGTGTCCCGCCTCCTCCTCCGCCATCGCCTCGAACACCCCGGCCGAGCCCGGCAGGTCGGCCCGCAGGCTCTCGGCGAAACTGCGGTAGATGCGGGAATCCTCCTCCTCGCTGGCGATGGCGAGGGCCAGCACCTCGCGTTCGGTGAGATCGGTCAGGGCCTTCACGGGCATGCTCCACTCTGGAATGGCTCCAATCTAGAGATTGGAGCCATTCCAAACAAGGGCTTGCGTGCATCGCACCATCCGGGGCCGGGCGTCGCGCGGACGATGGCCCTCGACGACCGGGCCGGTCTCGGGCATGCTGACACGCCGCCGGTCGCAGATCTTCCCCAACGGCATCTTTGACATCGTGAACGGTATCAGCGATTTAGCTGGTAGA # Right flank : CCCTGGCATGCGTGCGCTGCCGCACGCCGCTGCCCGCATCTGCGCCCGCGCGGCGGTTGCCTCGCGGGCCCGAACGGAGCATGACGGCGCCCGGATTCGCGCGGGCCCTTGCGTCCCGCGGGTGCGAGGCCGCGCGGGAGGCTTGTCCCGCGCTCCGAAGAGCCCGTCCTCCCGAACGAAGTGCTGCCGATGAGCGTCGTCACCCGCATCGCCCGCAGCCGGGCCGCCCAGGAGAGCCTCGGCTACCTCGGCGCGAGCTACCTGAAGCTGGTGCAGGGCACGAACCGCTTCAGCCTCGATCCGCCCGGCGCCTACGACTGGCTCACGCCGCTGCGGCCCTTCATCATCGCGATGTGGCACGGCCAGCACCTGATGGTGCCGTTCGTGCGCCGGCCGCAGGACCGGGCCGCCACCATGGTGTCGCGCTCGGTCGACGGCGGGGTGAACACCGCCGTCCTGGAGCGGATGGGCGTGCGGGTCATCCGCGGCTCGGGCGCGCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACTCGCGGGGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 23414-25192 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRL01000054.1 Methylobacterium indicum strain NS228 contig_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================= ================== 23414 29 96.6 32 ............................T CAATACATGGCCTCGATCGGCCTGACCACGCA 23475 29 100.0 32 ............................. TCGACCATCGCCTCGAGGTGATCGCCGACGAT 23536 29 100.0 32 ............................. AAGCGTCAGCGTCGTGTTGACGTTGACGATCG 23597 29 100.0 32 ............................. TTGCCCGAGTTGATGACCGAGCCCGCCTCGAT 23658 29 100.0 32 ............................. CGGTACGTCGGCAATGGCGATCAACAGGTGTC 23719 29 100.0 32 ............................. AAGACTATGCCGCCGGCTCAGGATGCCGCGCC 23780 29 100.0 32 ............................. AAAGCACCGTGCTCGCCCGCGCCAAGTCGGCG 23841 29 100.0 32 ............................. AGGATGGCCGCAGCCACGTCGGGGTGCATCGC 23902 29 100.0 32 ............................. ATTCTGATGCGCCGCTTTTCCCGCCGCCTCGC 23963 29 100.0 32 ............................. CGGAGAACAGCCATGAACGCCCAGACCGCCGC 24024 29 100.0 32 ............................. TCAGGGCCGCCACAGCCGCGTCGTTCGCCGCC 24085 29 100.0 32 ............................. GGGCATCGCTCCGGCCGCCTCGTAGAGCACTC 24146 29 100.0 32 ............................. CGCCAGATGATCGGGGTAGACGGACCGCTGGA 24207 29 100.0 32 ............................. TCCGGTAATTTAGGCGAGAGGGGGACGGGCGG 24268 29 100.0 32 ............................. TTGTCCGAGGACGAATTTCGGGCGCTAAGCAG 24329 29 96.6 32 ............................T CGTGCGCTTCGCTTGCGTGGGCGATCCGGCCC 24390 29 100.0 32 ............................. TACTGCCAGATGAGCGTCGGCAGCGGCGGCCT 24451 29 100.0 32 ............................. CGCGAGGCCGGCGCCTCCCCGGGCTGGGCCGC 24512 29 100.0 32 ............................. ATGCCGGCCAACCCGGTCATGCGGTTCTGCAC 24573 29 100.0 32 ............................. GTCACGACCTTCTCCTGGACCGAGGAGTTCGA 24634 29 100.0 32 ............................. GCCTCTACACGGGGCATCCCCGGCCCCTCACC 24695 29 100.0 32 ............................. ATGACGGAGGACGCCCAGTCGGCCCTCACGAT 24756 29 96.6 32 ............................T TCCGTGACGGCCGGCAAGGTGGACGCGGGCGC 24817 29 100.0 32 ............................. TCGCTCGCAAGCGTCGTGACCGGACGCTCTCG 24878 29 96.6 32 ............................G TGATTTCCGACCCGGAGTGAGGCGCACCAGTC 24939 29 96.6 32 .........................G... GCGCGCCTCGCCGCCTGGGATGGCGTGCTGGC 25000 29 96.6 32 ........T.................... AACCTCCCGAGCCGCGAAGACGTGCTCCGGCA 25061 29 100.0 71 ............................. CGCCCGTCCCCCTCTCGCCTAAATTACCGGAGGGTCGATCCCCGCGGATGCGGGGGAGCCTCCAGCGGTCC 25161 28 86.2 0 .T..A.........G......-....... | AT,T,T [25171,25177,25190] ========== ====== ====== ====== ============================= ======================================================================= ================== 29 29 98.8 33 GGCTCCCCCGCATCCGCGGGGATCGACCC # Left flank : ATCCCGGGTCTGATCGACGCGATCAAGTCCGTCCTGGTGCCTCGGGAGCGGGACGACGCCCCCCAGGCGGAGGTCGGTTCGACGACCGACCCCGAGCCGACGTGAACGCGACGAGGAGAGGGGCATGCCGCTCTGCGTGGTCGTCACCCGCGATGTCGAGGATCGCTACCGGGGCTTCCTGGGATCCGCCATGCTGGAGCTGGCCCCCGGTGTCTACGCCTACCCGCGCATGAGCGCGGGCGTGCGCGATCGTGTCTGGACCGTGCTGTCGGACTGGTACGGCCAGCTCGGCCGTGGCAGCATCGTGATGACCTGGGCGGACACGTCTGCGGCAGGCGCGCTCGGCGTTCGCACGCTCGGCTCGCCGCCCAAGGAGGTGATCGCCCATGAGGGCGTCCTTCTCACCCGCCGTCCGCTGGGCCGCGGAGCGGGGATACCGCCCCTGGCCCAGGAGACGAGCTCTTTGATAAGTGAATGATGTCAGTATATTGACTGGCAGA # Right flank : CGCGGATGCGGGGGAGCCGAGTGCTCTACGAGGCGGCCGGAGCGATGCCCGGGTCGATCCCCGCGGATGCGGGGGAGCCGGCGGCGAACGACGCGGCTGTGGCGGCCCTGAGGGTCGATCCCCGCGGATGCCGGGGAGCCGCGGCGGTCTGGGCGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCATCCGCGGGGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //