Array 1 10443-7250 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOQG01000003.1 Caviibacter abscessus strain CCUG 39713 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 10442 36 100.0 30 .................................... TATTAGTTGGTTCTGTTCAATTTGAGATAT 10376 36 100.0 30 .................................... AATTTACTCCATTTGTAACGAATTTGATGC 10310 36 100.0 30 .................................... TAATGAAAGCGCAAACAGCAACGCAACAAG 10244 36 100.0 29 .................................... AATAAACTCAATTCAACAAGAAATCAATT 10179 36 100.0 30 .................................... TCCAAATAAGATTGTAAGCTTGTCTAGGAA 10113 36 100.0 30 .................................... TAAAAAATGCAGAAAAAGAAAATGCGGAAA 10047 36 100.0 30 .................................... TTCTGGCACTAAAAACGGTAAATAAAATAA 9981 36 100.0 30 .................................... ACAAAAAGTTAATTAAAGGTAAATGGAACT 9915 36 100.0 30 .................................... TAACGAAAATGGAAAATACGCTTCGATAGG 9849 36 100.0 30 .................................... GCGGCAAAAGACAAAGAAACCATCGAGTAC 9783 36 100.0 30 .................................... ATATGTACTCAACATTAAAAAATAAAGAGA 9717 36 100.0 30 .................................... AAATTAAAGAGAGAAATAAAAGAAGCGTGG 9651 36 100.0 30 .................................... TTGCTGAAAATCTGCAAAAATTAAGCAGTT 9585 36 100.0 30 .................................... AGACGGGATTTGATGAAAGCTCAAACCGAG 9519 36 100.0 30 .................................... CAGAGCTGACACCTAAGACATTAAGACATC 9453 36 100.0 30 .................................... TGCAATTGAATAGCGAATTCTTGCAAGTCA 9387 36 100.0 30 .................................... AAGAGAGAAATAATAGGATAATGAGAGAGA 9321 36 100.0 30 .................................... CCTGAAACTTGGAAAAAAGTGTTACTTGAA 9255 36 100.0 30 .................................... AATATCCAGAATATGAACTTGTGTTAGGCG 9189 36 100.0 30 .................................... TAAAAATGAGGTTCGGGATTAGCCCTACAG 9123 36 100.0 30 .................................... TATGAGAGAAAGAGAGGATACAGCTGTCCA 9057 36 100.0 30 .................................... TTTCATTTAAGAATGCTATCATGTTTAATG 8991 36 100.0 30 .................................... GGTTGAACAGTTACAGAGAAAAAGAGCTGT 8925 36 100.0 30 .................................... GAAATTTTAACATATTTCGTTCCGTATCGT 8859 36 100.0 30 .................................... CACCTAAGACATTAGGGCTGGTGTCAGTGG 8793 36 100.0 30 .................................... ATAATTGATGAAAAGACAGCATTTGAAACA 8727 36 100.0 30 .................................... TGTTCAATTGTACATTATCTGGTAGTTTCA 8661 36 100.0 30 .................................... ACTTAGAAAGTAAAAACGTTAATAAATTAG 8595 36 100.0 30 .................................... AAGAAAAAGAGAGTATAGAAATAGCGAAAA 8529 36 100.0 30 .................................... ATTCCTATTATGAAGATACATACAATACTT 8463 36 100.0 30 .................................... ATAACTCAGGAACGTTATTAACTGAACAAA 8397 36 100.0 30 .................................... CGAACGAAGAACTTGAATATCTTCTTGAAA 8331 36 100.0 30 .................................... CCTGTTTGCTCTTTGAGTAACGTATCCATT 8265 36 100.0 30 .................................... CTTTAATAACGTTCTAGTTGGATGTGGAAA 8199 36 100.0 30 .................................... TAATACCAATTTTAGAAGGAATAACGCCTA 8133 36 100.0 30 .................................... AAGCAAGAGCAGGAAATACACAACAAAGCA 8067 36 100.0 30 .................................... TTCTTGACTTATTTAAAAGTGGATGGACTG 8001 36 100.0 30 .................................... ATTTTTTATATTATAATCTTTTAGTCTTAT 7935 36 100.0 30 .................................... CATCAAGCTTTAGATTTAATAATATTCTTT 7869 36 100.0 30 .................................... TTATTTTGGAAAACACAATAGCCGACGTCT 7803 36 100.0 30 .................................... AATAATTTCAGGAAAACAGAAGTAGTGCAA 7737 36 100.0 30 .................................... TTCATAGCTATCTTCTGGATTTTCACTAGT 7671 36 75.0 20 ........................ACACA.G.GT.T ATTAAAGACAATGATAGTGT Deletion [7616] 7615 36 100.0 30 .................................... TAATTACTGAGCAAAAGAGCGGAACAAGTA 7549 36 100.0 30 .................................... ATGGAACAATTGAAAATGCGTTGGGGAGTA 7483 36 100.0 30 .................................... TTAAAGAAAAGGGAATTAATGCAACAATGC 7417 36 100.0 30 .................................... TTTTTGCGTAAAAAGGGTATAATTGTATCG 7351 36 100.0 30 .................................... TAAAAAATGGTGATTTAAAGCATAAAATTC 7285 36 83.3 0 .........................TTTA....T.T | ========== ====== ====== ====== ==================================== ============================== ================== 49 36 99.1 30 GTTTAAGAGTTATGTAAATTTAAATAGGTATAAAAC # Left flank : AAAACGATTAATAAGTATTATAAAAAATTATGTTTAATTTCTGAAACAGAATTTATGCATGAATTATATGAATTGAAAAGTAAAATTAATGAATATATTTTTAATTTATTACAAATTGAAAATTTAAATATAAATTTTGATGAATTAGAAAATATAAATTTATTTAAATTAATAAATCTGCAATTTAACAACAATGGAAATATCCTTGAAAATTTACTAGATAATATGAAAATATTAAATAATGTATTAGGAATAGAAATATTTATATTAACAAATATACAGATTTATTTTAATGAAAACGAAATTATTGAAATATTTAAGTTTGTATTATATAATAATTTTAAGGTAGTTCTATTGGAAAACCATAAAATAGTATCAAAATATATTGATAAAACAATTATTATTGATAACGATTTATGTGAAATTTTCTAATTTTATTTAAATTTGCATTAAATGGGGTCGTTTCCATTACTTGAAAAAGTATCTTAATCTAATTTGAG # Right flank : AAATACACAATATTATTTTTTGTTCTTTCTAATTTTTAAATAATCATATATATAACAAATATAATAATTCTGATTTGAGCAATCAAAAAAAATTCTCCATGATTTTATCTAAACAGTTATATTGTTATGCCTGTTTTCTTTTTATTTTAAACAATTCTTATACATTTTGTGTTGATACCGCCAATCATGGATTTGTTGTCCAATAAAAATTTTTTCAAATTTTCCACCTGATGGTAATATTATAACTTAGGCTAGCTATTGTTCATCTTATCCTTTATTTTCCCACTATTGAATTAAGTCATTCAATTTTTTTATATTCAACTTCAAGAAAAAGACGCTTAACTTCTTCTATAAGATTTTAACTTTCATTAACATCTGAAACCTATTCTTAAATTAGACTTTCCTTGCCATTTTTTTATAACTCTTCTCTCGCATATTTAACTCATTTTTTGACATATTGATTATACTTTTTGGAATAATATTAAATTCTATTAAGTATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAGTTATGTAAATTTAAATAGGTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTTAAGAGTTATGTAAATTTAAATAGGTATAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //