Array 1 3086585-3084683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035547.1 Salmonella enterica subsp. enterica serovar Typhimurium strain YU07-18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3086584 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3086523 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3086462 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3086401 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3086340 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3086279 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3086218 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3086156 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3086095 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3086034 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3085973 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3085912 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3085851 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3085790 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3085729 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3085668 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3085607 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3085546 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3085485 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3085424 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3085362 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3085259 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3085198 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3085137 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3085076 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3085015 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3084954 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3084893 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3084832 29 96.6 30 .....T....................... GGTTAACCGGGGTTTTCCCCACTATTTCGC 3084773 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3084712 29 96.6 0 A............................ | A [3084685] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3104209-3102716 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035547.1 Salmonella enterica subsp. enterica serovar Typhimurium strain YU07-18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3104208 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3104147 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3104086 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3104025 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3103964 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3103903 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3103842 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3103781 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3103720 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3103659 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3103598 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3103537 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3103476 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3103415 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3103354 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3103293 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3103231 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3103170 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3103109 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3103048 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3102987 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3102926 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3102865 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3102804 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3102743 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //