Array 1 195567-196934 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ084311.1 Cronobacter malonaticus strain HB03 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 195567 29 96.6 32 ...................A......... GTTATAGGTGCCACGGATAGAATTTTTATCAA 195628 29 96.6 32 ...................A......... AACAGGAAACGGTTTTCATCAGTACATTGCCG 195689 29 96.6 32 ...................A......... GTTGATGTTACTGAACGCTTTCAACTTAGTGG 195750 29 100.0 32 ............................. GGGTGTTCGTTGTCGATGGCGCTACGTCAGGC 195811 29 100.0 32 ............................. AGCTGCGGACAACGTCTCTTCTATGCGGCTGA 195872 29 100.0 32 ............................. TTAGGCGGCGCAAAAGTCTCACACCTTCACCC 195933 29 100.0 32 ............................. ATGGGGCTCGGAGATTTTGTTTTCTCTATATC 195994 29 100.0 32 ............................. TGGTGGCGAATAAACTGCGCGCGATCACGTAC 196055 29 100.0 32 ............................. GTACATATCTGTCTATCCCACCTCTCAACGCA 196116 29 100.0 32 ............................. CGCCGCATACTCGCAAAACGCTACGCTCCGAT 196177 29 100.0 32 ............................. CCTTGCCGCTCTTGCGATTAGCCCGGAGCGGA 196238 29 100.0 32 ............................. ATTCTGACGGTATCGGTGACGGTATCGAAACA 196299 29 100.0 32 ............................. ACCATTTACACCGAGTGCAAATATCAGGGCGC 196360 29 100.0 32 ............................. GGATGAAACCGAAGACGCGCAAAAGCGGCTCG 196421 29 100.0 32 ............................. GGCTTACCGCCCTACAGCCAAAAACCTCTGTT 196482 29 100.0 32 ............................. AGCGGGAGCTGGCGCGTATAGCGCTGGACTGG 196543 29 100.0 32 ............................. CCGCTAAATTCAAGAGCTACAGCTCCCGTAAC 196604 28 96.6 32 .............-............... GGTTAGGAAAACCAAAAGGCGCTGGCGCGAAA 196664 29 100.0 32 ............................. CACACCACATCACCGGCACAAGACGGCGCGCG 196725 29 100.0 32 ............................. ACGGTGGACAGGGTTAGGGGCGATAAAATATT 196786 29 100.0 32 ............................. AAAATAACCGAAGGGTTTTTTAAAAGCGGTTC 196847 29 93.1 32 ..A.........T................ TCGTAGTACGCCTTAACGGTTTCGGCGCGGAT 196908 27 82.8 0 ...........-.-...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGAATGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCAGGTTCTTCGCGCCTGTCAATCACCTCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTCCACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGAGCATCACGGACTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGACATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGGTTTACGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTACATCTGATGCAGCGGGAAATGACCGCTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 223590-224656 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ084311.1 Cronobacter malonaticus strain HB03 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 223590 29 100.0 32 ............................. ATATGAGGGGGGATGATGTCTACGAACAAATC 223651 29 100.0 32 ............................. GCCGGTCACAGGGTTGTCGGAGTTCCTGAACA 223712 29 100.0 32 ............................. GGCACGTTGGCTGCCCGCCGATTATTGCCGTC 223773 29 100.0 32 ............................. GGCGCGCGGTACCGGCACAGGAGGTTGACCAC 223834 29 100.0 32 ............................. TCAGCCGGCACCAGACGCAGCGTCAGGTTACA 223895 29 100.0 32 ............................. ACGGATGAAGTCGGGAAGGGTCAGGTCCGCAT 223956 29 100.0 32 ............................. CGAGAGCAATAGTGAATGGGTGCCCGGTCATC 224017 29 100.0 32 ............................. AACTGTGAGATTACGCCGTACCTTTACCGTGC 224078 29 100.0 33 ............................. CACCAGCAGCTCCCCGGCGGCTTTTCGCCCTAC 224140 29 100.0 32 ............................. AACGCTACGCCGCCGCCGCTGAGGCGGCAGGG 224201 29 100.0 32 ............................. GACGGGCGAGAGCGCCAGAAATCTTCGCGCCA 224262 29 100.0 32 ............................. CGCGCGAATCCGGCCCAGGTCTTGTTCTGCCA 224323 29 100.0 32 ............................. TGTTCTGGACTTGCGACGAGCACAAAACTGAC 224384 29 100.0 32 ............................. CCCAGCCTAACGAGGATTGGGCATTAACGTCG 224445 29 100.0 32 ............................. TGGGTGATGCCAAAAAAGAGCGCCTGGGCTAT 224506 29 100.0 32 ............................. GTGATTTCACGCCGGAGGAATACGGGCAAATC 224567 29 100.0 32 ............................. CCTTACCAGTCCTTTGATTATGAGGAGAGAAG 224628 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGGCTAGTTTCGTTTTTACCCTTGGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGCTGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATCGCCAGGCCTAGTGGGTGCGCTTTGCTTACCCACCCTACATATATTGATTGCCAGGCCTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 120114-119232 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ084312.1 Cronobacter malonaticus strain HB03 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120113 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 120052 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 119991 29 100.0 32 ............................. TGGTGTTGTCCACGGTTACCCGCTGGCTGGAA 119930 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 119869 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 119808 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 119747 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 119686 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 119625 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 119564 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 119503 29 93.1 32 ............CA............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 119442 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 119381 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 119320 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 119259 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 95.0 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATCC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //