Array 1 171276-173379 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMQB01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain SL_42_S216 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171276 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 171337 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171398 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171459 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171520 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171581 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171642 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171703 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171764 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171825 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171886 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171947 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 172008 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172069 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172130 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172191 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172252 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172313 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172374 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172435 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172496 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172557 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172619 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172680 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172741 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172802 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172863 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172925 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172986 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 173047 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 173108 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173169 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173230 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173291 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173352 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189887-192722 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMQB01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain SL_42_S216 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189887 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189948 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 190009 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 190070 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 190131 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190192 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190253 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190314 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190375 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 190436 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 190497 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 190558 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190619 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190680 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190741 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190802 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190863 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190924 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190985 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 191046 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 191107 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 191168 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 191229 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 191290 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 191351 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191412 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 191473 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191534 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191595 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191656 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191717 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191778 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191839 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191900 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191961 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 192022 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 192083 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 192144 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 192205 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 192266 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 192327 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 192388 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192449 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192510 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 192571 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192632 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192693 29 93.1 0 A...........T................ | A [192719] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //