Array 1 790512-794688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054425.1 Bifidobacterium longum subsp. infantis strain Bi-26 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 790512 29 100.0 32 ............................. TCTCCGAGCACCTGCTGGGTCACCTCCAGTTC 790573 29 100.0 32 ............................. GCCGCGCAGGTCTACCACCTGATCAAGGAAAA 790634 29 100.0 32 ............................. GACGGCGTGTGGGGCACGTTCAACGTTCGCGG 790695 29 100.0 32 ............................. AACGCGGCAAAACAGAAAGCAACAGAAACGAT 790756 29 100.0 32 ............................. GCCATCGATAAGGCCCTGACACAAGTGCAAGG 790817 29 100.0 32 ............................. GCATCGGCATCGCCCAATGGAGTTTCAGCCGC 790878 29 100.0 32 ............................. GAGCCCGCGTGGTAGCCGCGCACGTAGAAGTT 790939 29 100.0 32 ............................. ATGTTCGTCCACCTTGTCGGAGGTCTGCATGG 791000 29 100.0 32 ............................. GCGCGCGCCGCCAGTCTTGACGGGATGTATTA 791061 29 100.0 32 ............................. GGGCCGCCATCAACAGCGGCGACCGATACGCG 791122 29 100.0 32 ............................. CACAGACACCATAAAATCATCAGACGTAACAG 791183 29 100.0 32 ............................. TACGGGCCAGATCGGACGCCCCGCCATATGAC 791244 29 100.0 32 ............................. AAGCGTAACAGGCAGAGGCATGTGAAAGCCCG 791305 29 100.0 32 ............................. TCGAAGGCTCGGCATGGTATGACGCATGGGTC 791366 29 100.0 32 ............................. GTCGCCTGGCTTGTGGCCATGCTGCTGGTGCC 791427 29 100.0 32 ............................. CCGTCTCGCATGTCCAGTGGCGTGGCGTCATT 791488 29 100.0 32 ............................. GAATGACCATGGACGATATCACATGGATAGGT 791549 29 100.0 32 ............................. GACAAGGTACGCGAACTTATGGCCAAGCCCCT 791610 29 100.0 32 ............................. AAGCCCCATTGGCCGTCAGGTTGGATGTAGCT 791671 29 100.0 32 ............................. TACAGGTTGTCGCCCTGCCAGAGTATCCATGC 791732 29 100.0 32 ............................. ACCATGGGAAAAATTTCACACAGGGCACACCC 791793 29 100.0 32 ............................. AACGGCAGCCAGCTGAGGCCGGGCGGCGCGAC 791854 29 100.0 32 ............................. ACACGATGCCATGATGGACGTTCCCTCCTTCC 791915 29 96.6 32 ............................T GCGTCCTGGCTTTTGATTGCCTTGATGTCGTC 791976 29 100.0 32 ............................. GCGTGGAGCTGGTGGGCTTTGCGCTGGCTCCA 792037 29 100.0 32 ............................. TCGATTCGATGGCCCGACCGTCAGGCAAGTCG 792098 29 100.0 32 ............................. ATATCCAGTCGGACAATCTCACCATCCGGGAA 792159 29 100.0 32 ............................. ATGGCGAACAGATTGCCAAAAGCGTGCGCCAG 792220 29 96.6 32 ............................T GTGGCCGCACTGTCATTGGAGATGGTCGTATC 792281 29 100.0 32 ............................. ACCGTCTCCAAGCCGGTGTCCGGCGTCGCCGG 792342 29 100.0 32 ............................. GCCGACGAGGCGGTCGCCAAGGGCGAGCAGAT 792403 29 100.0 32 ............................. GGCGAAACCCCAATGGACGCAACGGTTGAGAG 792464 29 100.0 32 ............................. TTCGTGTACTCGCAGTCGCGCATAACGATGGT 792525 29 100.0 32 ............................. AGGGGCCGTGAAATCAGCCGCAACATGGCGTC 792586 29 100.0 32 ............................. GCCGGAAGCGCCGCGAACCCCGCCACCCCGAG 792647 29 100.0 32 ............................. TATCTGTGCCGTGTCTCCGACTGCGTGTTCGA 792708 29 100.0 32 ............................. TCGGAGGCCCCGCCGTCGCGGGGGCTCACGTC 792769 29 100.0 32 ............................. CCACTACAGTGGAACAGACTGCCAATGGCCTT 792830 29 100.0 32 ............................. ACTTTTGGTAAATGATTGGTTGACTATGGTCG 792891 29 100.0 32 ............................. GTATCCCGCTGTTGCGGAATATCGACATCATG 792952 29 100.0 32 ............................. CGCCTTTGCGAATGTCGTAGACATGAGCGGCC 793013 29 100.0 32 ............................. GCCATGACCTAGATGACCGAGACGATACCCGT 793074 29 100.0 32 ............................. GGGCACCAAACCCGCGACCCGCGATCCGAGGG 793135 29 100.0 32 ............................. TGCGAGGAGCTTTGGCTTCGAGCAGTTCGACT 793196 29 100.0 32 ............................. TGCAGCATGGACATGTACGGCATGAGTATACA 793257 29 100.0 32 ............................. GCATGTACGACAAAGCCATCGACATCGACTGC 793318 29 100.0 32 ............................. GACGGGTCCCCGAACGATGTGATCGGCGAAAC 793379 29 100.0 32 ............................. ACCTCGGTGCGGTACGCGGCTTCGGTCATGCC 793440 29 100.0 32 ............................. GCCAAGGCCGACTATGATGCCAAGCTCGCCGA 793501 29 100.0 32 ............................. TCTTCACGCGGCAACGCGCAAGGTTGGAGCGT 793562 29 100.0 32 ............................. CCTGCGCCACTCTGACGCATTGGCACATAGAT 793623 29 100.0 32 ............................. CGGGTGCCGTCCCACGTCAGCACCTCGACCAC 793684 29 100.0 32 ............................. GGTGGATGATGCAGACGTACACGTATGCCTCC 793745 29 100.0 32 ............................. GGCGTGGCCGCGGTGCGGTTCGTCGTCGACGG 793806 29 100.0 32 ............................. CAGATCGACAAGCTGCGCGACGAGGTGAAGGA 793867 29 100.0 32 ............................. GCGTTGGCGTCGGCGGATGTCGCCAATTCGAA 793928 29 100.0 32 ............................. TCTTCAAACCCGCGATCTCATGCTGCAGTATT 793989 29 100.0 32 ............................. GAACCAGACCCGATACTCGACGACCCGGAGGA 794050 29 100.0 32 ............................. GACGGCATGGAGATGCGCCCACTGGATAACGT 794111 29 100.0 32 ............................. TAGGCGACCGCACCCTGCGAGAGCTTCGACTG 794172 29 96.6 32 ...................T......... CGGTCAAGGTGCTGGACGGGCGTCCGAACGGA 794233 29 100.0 32 ............................. ACGCCGCCTTCCGGGATTTCGAACCTGTCGGA 794294 29 93.1 32 ................T...A........ GCATACCGGTTCGGCTCCGACGACGGCGAGAC 794355 29 100.0 32 ............................. CCGGCATCCGACTGGACCACCGACGCGGAGAG 794416 29 100.0 32 ............................. TACACAGGCACGCGCATGAGATCTCCCACCAC 794477 29 100.0 32 ............................. GATGTAGATGCGGTCTGATGCTGTGAGCTTGA 794538 29 100.0 32 ............................. GACGGCAAGGTCATCGACACCGAACGGAACGA 794599 29 100.0 32 ............................. GACGCGCCGTTCCTGACGCCCAGATTCAGTCC 794660 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 69 29 99.8 32 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : ATAGGGCAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTAACGCGTTGGCTGTTTGAGATATCCCCTGGTGTCTATGTAGGCAAAGCTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATCAGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGACTTCAGAACACATGGGCAAGAATGGGAGCCAGTGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAAGCAGGAACAATAGCACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : GTCGGTTATCTTCGTGGCCGACCTGTCCGCGTCGTTTGCCCCTGTATTTAGTCAAGTCGGTGTTTTGGGTTTGGTCATGTAGTTTTTTCGGGTTTGGTCATGGGGCGTGCCGGCCGGGTTGGTTGGTTATTGGGGTTGGTTTTTGCCGAACATGAGCGCCTCGCCGATGCGGTGGCTGGGCCGGTGAATTCGATGAGCCGTCCGTGGTGGACGATGCGGTCGATGATCGCGGCGGCGAGTTTGTCGTCGGCGAAGACCGTGCCCCATTTGCTGAACTCGATGTTCGTGGTGAAGATGATGCTGCGTCTCTCGTACGAGCTGGCGATGACTTGGTAGAGCAGGCGGGCGCCGTCGATGTCGAAGGGCACGTAGCCGAATTCGTCGAGGATGAGCAGGTCGGCTTTGGAGATGTCCTTGAGCAGGTTGTCGAGGTCGCCGTCGCGTTTGGCCTTGCCCAGTTGGAGCATGAGGCCGGCGGTGGGAAGAAACCTGACGTCCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 814336-814568 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054425.1 Bifidobacterium longum subsp. infantis strain Bi-26 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 814336 33 100.0 33 ................................. TATAAATCGACCGCGAACAATTACGTAGAAAAG 814402 33 100.0 34 ................................. CAGAAACGCGCGACCGCGCTGGGCACCTTTGGAA 814469 33 100.0 33 ................................. CGAACAAGCCAGGGACGAAATATTTGGTCAGCG C [814483] 814536 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 100.0 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : CTGCGGAACGTGGCCAAGATTTGCATGAGATACGGTCAACGCGTGCAGAACAGCGTCTTCGAGTGCTCTGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATTTGGCGGCGGTTATGGATGAGTCGCAAGACAGTCTTCGGTACTACAACCTCGGGGCGAAGTATTCCTCGAAGATCGAATATCGAGGAAGGCAGCGACACATGCCTGTTGATGGCGTGATGATGCTTTGATGCCGGATTGGTGCGTGCGTGTGGATGTTGGTCGGTGCGAGCCTCAAGCTCTCATGAAGTACTGGGCTGTTCGCACCACGGTTGAGGACTTCTGAAGACGGTGTATGTTCTTTTTGCTGTTTGATAACTCAAGAGTGGATGATTTGCTGGTATTTCGATTCGGCAGATTTGCGTATCTGGGGAGATATGAATGGATTGTACAGTACAATCGATGCTAAGGAGTGGTCGGAGTGTCCGTATCTTGGGATGCGAAGTCCATTCCCGCG # Right flank : TCTTGGGCACCGACCTGCAGACCATTCTCAGCTCGCGTCGCACCCTCACACCATGCAAGGCCGAACCGTCGTCGAGTCGCTAACGTGGTGCGATTGCCGGCATGGAATTGTCTCGCACCGTCTGAGTGGTCTACAATGGCCGCTAATCCAAGTTAGGAGTAGGGCCAGGGATTAAAGGAATTGAGAATGAAACGCGGAATGACGCAACGTGAGTTAGCCGAAAAGGTTGGCATGTCAGGCGGCAATATCGCGGCTATCGAGTGTGGTAGGCGCTCTGAGGCTAACTTAACCTTAGCCACTGCGATAAAGCTGTGTGATGCTTTGCGTGTGCGTAATCCGCGTAAGTTACTTGATTCTGATTCTGAAACTTCTGCGGATTAAGTAATCCGCTAGGGCTATTGCGCTCTTTACGGGTGTGGTAGTCCACGAAATGTTAATGTTCAGCCGATATGATCGGCGTAAGAGTAAGGAGGTGGCATAGTTGCCGGGAATAAGCAGGT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //