Array 1 890834-891661 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024696.1 Prevotella intermedia strain KCOM 2033 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 890834 36 100.0 30 .................................... CTTCTTTCAAAGATGTGTACCGCAATGCAG 890900 36 100.0 30 .................................... ATAATTAGTTAATAAATATATAGTATAACA 890966 36 100.0 30 .................................... AATCATCAAGTGTTATTACTTCACCACCTG 891032 36 100.0 30 .................................... CGTCGAACAAATCGTCTGTACGTCCCATCT 891098 36 100.0 30 .................................... TGTTTATAACTGTTTGCATTTTGTTACTAA 891164 36 100.0 30 .................................... TGACAGCCGATGTAGTATCCTGCAGAACAA 891230 36 100.0 30 .................................... TACTTTCAGGAGCAATAGCTTCACTTAAAT 891296 36 100.0 30 .................................... TACTTTCATCTACATTTATATGTATGTCTG 891362 36 100.0 30 .................................... TACTCAAGGATATTCAATATCTCGGGTCTG 891428 36 94.4 30 .............T.......A.............. ATAGTGGTATCTTGTTCCGTCAAACATTCC 891494 36 100.0 30 .................................... GTTTTTTATCTTCTCATCTAACCAATTGTC 891560 36 100.0 30 .................................... TCTCCATCGGTCGCAGAGTCAAGTTCTATT 891626 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.1 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TGCGGAATGCCTTTTCGCACAACCAATACCCAATGTACAATGAAAATCTCTTCGGAAATATTGAGCGGTTCAGCCTTTCTTCTTCTAATATTATAGAAAGTAAGGGGCTCGATATTGCTGCAAAACTGAAAGAGGAAGTTAGTAGGGCAGCAAAAAAAATACAGAACGAGGAAGACGACAAAAAAGAAAAAGAAACTTAAAAACAAGATTATGGATAGTACACTAATATAAAAAGGAGGCAATGTTGCTGATGTTGAATACAGCAAGCACGCCTATGTGCTGTTGCTTACTGCCAAGGACAAGCCCGACGAAACGATAGAAATAAAGAATGAGAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTGAAATGGGTGGTGAAAAGAAAGAAACAAAACATATAAGAATCAGACAGTTAGGTTAGATAC # Right flank : CTTATTAACAAGCAAGGGAATGGAATTGGGGAAGTAGAAAATGGAAGGGGGAACACGCCTTTCTATGGGTGAAGAAAGGCGAGAAAGGTGCAAATATTTTTCACAAGCAAAACTATTGCGTAACTATCTCGTTATCAGCGCATTGCAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGCTTTTTCTATGGAATTATCTTTACAAAACAGGAGTGGTTTTACGTCGTGTAAAGTGTAGAGGTTGTGGCGTGGGTTCGGGCGGCAGCACAATGGCGGCTTTGCCGATAGTGCGACATTGGCAAGGGTGGTTGGGGCTTCTGCATCGGCTCGATGCGGTGGCTCGTTCGGTTCTGTTGGTTTCGGTTGATGTGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGTTTTCTCATATCGTTAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 1603806-1605384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024696.1 Prevotella intermedia strain KCOM 2033 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 1603806 47 100.0 30 ............................................... CAACCGTGATATACAACGTATCATTGACAC 1603883 47 100.0 29 ............................................... CAGTGGTGTTAATGTGATATCCCATATCG 1603959 47 100.0 29 ............................................... GCTTTACAGACATTTTTAATAGTATCAGC 1604035 47 100.0 29 ............................................... TGGCTGAAAGTCAGAAATACGTTTATGAT 1604111 47 100.0 30 ............................................... GGTAACACTCCAACGTATTTGTTTGGAATA 1604188 47 100.0 30 ............................................... GGGTGGTATCAACCAAGAGTTTTCATGGCT 1604265 47 100.0 31 ............................................... TTATAACTTCTGATAACTCCAATGGTTTCTG 1604343 47 100.0 29 ............................................... GCAAGAAGGAAGGTTATTTGTTGGCGAAA 1604419 47 100.0 29 ............................................... ACTCTGTTATTATTGATGTGTCTTCTTTT 1604495 47 100.0 30 ............................................... GCTTCAATATTTGGTCGTATATGTAGCTGT 1604572 47 100.0 29 ............................................... TGCCAGGTTGTTTTTGCTTTTCCATTCCT 1604648 47 100.0 30 ............................................... TAATTATGTATTAGACCCACACCAGCAAGC 1604725 47 100.0 30 ............................................... CGAAAATCTCTCATAACGTACTTGTCGTTG 1604802 47 100.0 29 ............................................... TTAGCGAACTTGGCACTTGCCTAATTATG 1604878 47 100.0 30 ............................................... TAATATGTATAAAAAGACGGCAGCTATTAA 1604955 47 100.0 30 ............................................... AACTGTAACTTTCATTTCTAATTCAATTTA 1605032 47 100.0 30 ............................................... TGACGTGGTGGAAAGTATTCAGAAGGCAGG 1605109 47 100.0 30 ............................................... ACATTTCTGAATGTTATATCAACAGGGATT 1605186 47 97.9 30 .........A..................................... AACCTCCGAGCACATTACGAAATGCCTACT 1605263 46 91.5 30 .........A....................C......-.....T... AACCTCCGAGCACATTACGAAATGCCTACT 1605339 46 91.5 0 .........A....................C......-.....T... | ========== ====== ====== ====== =============================================== =============================== ================== 21 47 99.1 30 GTTGTATTTGCCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGAAGAATGGTTTATCCTGAATTATAAAGCCTATTAGTGAAAGCTTATAGATTTAGTCAATACAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTGAAAGATGGATTTACAATGTTTCAGTTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAAGTACACATTAAAAGAGTTTCCACCTTTATTCCAGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGCAAGAAACCACAAAAACCAAATGCACCAGGAGCACAGTTAGAACTCTTTTAATCCTCCTTTTAGAAACAATAAAGTTCCATTCTTGACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAAGCTTTCGTAACAATACTGATGTTCATTACTTTAAGCTACTTGA # Right flank : CTAACGAAACTTCCGATTAATTGTTCTAGAATCAAGTAAATGGAGCTATAAATTTAACACAAGCGGAAAGGGGGAAAGAGAGAAAAAGAGAGAAGGAAAATAGGGGTGGAAAAGTAAAAGAGCCACTTTTGCAATGCAAAACAATAGGTTTTACCGTGCAAAAGCGGCACTTTGGGATTGCAAGAACGGCACTTTTGCAGAGCGAAAAGATGATGATAAAGCGCAAAATATAGCCTATATAGGAAGAAAAATGTTCGTTTTACAACATAAAAGGTATGGTTTCGTTGCACAACACTACCCTATAAGCTTGCAAGAAGCTATGAACGAAGCACTTATGGTAGCACGCAAATAATGGCGTTATTTGCAAATAAATAATTTGAAGTGCAGAAAAGTGCCCGTAATTCGGAAGTTGAGGCTTTGAAATTTAACAGTTTCGGAGTCGTTTTAACGAATATTCGGACTTTAACAAATGAAGGTATGCAACCACTGAAAATAAAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTGCCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //