Array 1 429074-427444 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCG01000001.1 Photorhabdus sp. S5P8-50 S5P8_50_scf0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 429073 28 100.0 32 ............................ TTTCTGTGGTTATACAACAGAAGCGATGCATT 429013 28 100.0 32 ............................ ATTCTCCGCCGCCGACATGAATATAAGAGCTT 428953 28 100.0 32 ............................ TAACACTCCAAAAAAAGTCGCTCCACCCGCTT 428893 28 100.0 32 ............................ TACTGTTTCGATATGTAATCCAGCGTAGTCAG 428833 28 100.0 32 ............................ GGATGGTTCAACGGGGCGTTATGCCTGGGTTT 428773 28 100.0 32 ............................ AAAACCGGCGCTGCGGCCATATTTGTTGTCAT 428713 28 100.0 32 ............................ AAGAATTGGAGTTTGCACTCTGCCAACTGAAA 428653 28 100.0 32 ............................ TGATCCGGATACGCCGGAACTGGAACCACTAC 428593 28 100.0 32 ............................ TCTAATCGTTCTCAAAATACATATCCATAGTG 428533 28 100.0 32 ............................ TGCATCTGGCCAAATGGATTGCCCGCAAACAC 428473 28 100.0 32 ............................ AAAAGGTGACTGGATAAGTTTTGAGCCTACCG 428413 28 100.0 32 ............................ TCCGGCATAGTTACCTATTACAGTAAAAATCA 428353 28 100.0 32 ............................ CTTGCCTTTCGCGCTCTTGGATCTCCAAGCAA 428293 28 100.0 32 ............................ CTCTGGATGTGACCTTTATCAACGAAGAAGAT 428233 28 100.0 32 ............................ GAAGAGATACGTTATGTAGCATCGGAATTAGA 428173 28 100.0 32 ............................ TTAACCCAGCGTCTCTTCCAAGTCACTTGCTG 428113 28 100.0 32 ............................ ACAATAGTAAAAGGAGAATAATATGAGTGATA 428053 28 100.0 32 ............................ CTAGCATCACGTAAGGATAAAGAATCAGGAGA 427993 28 100.0 14 ............................ CATACCAGAACTAG Deletion [427952] 427951 28 100.0 32 ............................ ATGTGGGTAGTATATCCGCGGAAGCGTTATTT 427891 28 100.0 32 ............................ TCACGTCGGTATCTCACTGGGGACCTCCCGTC 427831 28 100.0 32 ............................ TTTCAGGATTTTACCCATCAGGCGGGGATTCA 427771 28 100.0 32 ............................ CTCAAGAAGTTTACCGGTTTCTTACCGTCTGC 427711 28 100.0 32 ............................ ATAACAAAATGCCGCATTCGATGCCATTTAGC 427651 28 100.0 32 ............................ TTTCATTTCATTGCTGATAGTGCCGCCCTTGG 427591 28 100.0 32 ............................ AGACAGATTAGAAGTGTATGTGACAGAAGGAA 427531 28 100.0 32 ............................ TGAGTAAGCTTCAATGAGTTGACTTATTTGAC 427471 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 28 28 100.0 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAGTCAGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : TGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAATAAATATTGAAGTTCTTTTTTATAATGATTTGATAAATCATAACTTTTATTTCATATTCACTGGATAATGTTGGTTTAATTAAAAACAGATAAATAAAGAGTGATTGAAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 730-1237 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCG01000104.1 Photorhabdus sp. S5P8-50 S5P8_50_scf0104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 730 28 100.0 32 ............................ TTTATTGGCGGTTCTCGTGTTGTCTGAAATCA 790 28 100.0 32 ............................ ACAAAGCAGACGAGCGCAGCGGGAAGCGGTGC 850 28 100.0 32 ............................ AATGGCCGGTCAATTAGCTGGAGGAGTAGTGG 910 28 100.0 32 ............................ AACCTGATAATCCGAGCCGACATCACCCCACC 970 28 100.0 32 ............................ ACATAGCTAAGCACTTGCAATTACTTGGTTGG 1030 28 100.0 32 ............................ CGGAGTCATAACTGTAGGTTTCCACCCTAGTA 1090 28 100.0 32 ............................ AACGTGAGATGCAGTTGGAAATGAGAGCCTCA 1150 28 100.0 32 ............................ ATATGATTTGACTATCTATATTACGCGCCATT 1210 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATCATTTTTTATCTGTAATGTTTATATTTGCTCTCATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTTGATGACCGAATTCAGTGAATAGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATACTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : ATAGAAAATTATCCTCTTCTCTTAAATTATCGAGCATGCTGCCACATAGGTAGTTTAGAGCATAATCATTCCTGTTTAGGGAAGGCACTATTCTGTGAGTTAGTAAAGAATTGTAAAAATTTTTAATTTACATCTGTAATGTTTTACTTATGTGAAATTTATACATAGTATTTACCATAAGTTAAATTAATTAGTTAGGTAATTCTACATTATGGATAACAACTTTTCTCCGAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTTAATGGTGGCCGCGTTGAGTATGTCACTGATGAGGGAAAGCAATCCCTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTTGCTAAGGCGGGTGTTTTAGTTGGTTTTTGTGGAGGTGGAGGTACACCGCTATTTGCGGCTAATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4915-3389 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCG01000026.1 Photorhabdus sp. S5P8-50 S5P8_50_scf0026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4914 28 100.0 32 ............................ CTGTTGAAATGTCGCCCCTTTTGCGCCGATGC 4854 28 100.0 32 ............................ AAACAGCATTGAAGCGGAACAAAGCGTTCTGG 4794 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 4734 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 4674 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 4614 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 4554 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 4494 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 4434 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 4374 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 4314 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 4254 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 4194 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 4134 28 100.0 30 ............................ GGTAGCGCCCGATCCCTGATTCAGCTTTAA 4076 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 4016 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 3956 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 3896 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 3836 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 3776 28 100.0 32 ............................ TTTCTCTGTATCAATAACCGCTGTTGTGCCGC 3716 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 3656 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 3596 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 3536 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 3476 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 3416 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : CGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGTGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTTAGGTTAGCTGTAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25881-25433 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCG01000033.1 Photorhabdus sp. S5P8-50 S5P8_50_scf0033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25880 28 100.0 32 ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 25820 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 25760 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 25700 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 25640 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 25580 28 100.0 32 ............................ AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 25520 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 25460 28 92.9 0 .C..................A....... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACAA # Right flank : AGAGGATTAATTGAGCGCTTTTAGTGAATATTTATTCATTGCACCACAGCGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTTCTAACTCACTGTTTTATCAGCGAATTTCATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAAAACCATCACAGCATTTTAAGAAACAATAAGTTAAGTTAAATCAGTTGGTTATATTTTATATATGTGCATTGATGTAGAGCTATATATGATGTTGTCGCCACTTGAAATTAGTCATCTTCAATCTGATCGTAAGGGTTGAGAGTTAGCGCCAAATCAAGATGCTCTGGAGCAAAGTGCGCATAGCGCATTGTCATATTTATAGTGCTGTGACCTAATATTTGTTGTAGTACTAAAATATTGCCGCCGCGGGTCATAAAATGTGATGCAAATGTATGACGGAGCACATGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 29262-28813 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCG01000033.1 Photorhabdus sp. S5P8-50 S5P8_50_scf0033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29261 28 100.0 32 ............................ TCTTGAGTGTAGGTTAGGATAAAAATAACCAA 29201 28 100.0 32 ............................ ATATTCGTTCAGCTGCAAACACAGTAAGTGAA 29141 28 100.0 32 ............................ TCAGTGGTTTCACCATAAATCTTGATTGGCGC 29081 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 29021 28 100.0 33 ............................ ACGCATCAACTGGCCGAAAAAGTCAGTTCCCAG 28960 28 100.0 32 ............................ ATAGTGTAGATGGGCCATGCCTGCGTCCATGT 28900 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 28840 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCGGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : ACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCGGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGACGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27753-26405 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCG01000004.1 Photorhabdus sp. S5P8-50 S5P8_50_scf0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27752 28 100.0 32 ............................ ACAGCTCACGAAATGCAACACGATGCATGATA 27692 28 100.0 32 ............................ AACCCGCTTCTGCTGCGGATGCTGCTGGAGTT 27632 28 100.0 32 ............................ TGGAATAAGAGAGTAAATGTGGAGGAGTAGCT 27572 28 100.0 32 ............................ AATCAGCAACCCTATTCACCGGAGACGTTCGA 27512 28 100.0 32 ............................ CAAGGGCACGATTTCCCTTTGGTTTTATATGC 27452 28 100.0 32 ............................ GATGTGCGGAACAATTCAGTCTGCAAATACGT 27392 28 100.0 32 ............................ AATCGAAGAGCTTCATCCTTGTGAGTTTCTTC 27332 28 100.0 32 ............................ TGTCCAAAGAGTGAAGCCGGTTCCTCCTCCCG 27272 28 100.0 32 ............................ GGCTGATGAGACAGTCCGATAATAGAACCCAC 27212 28 100.0 32 ............................ ATACCGGATTGTTAGTAAAACCTATCCACTTT 27152 28 100.0 32 ............................ CATAAGCGGGACTAACCCGCCATTAATCAAGA 27092 28 100.0 32 ............................ TGTTGAGCAGATGCCAACTCGGGTAGTGTCCA 27032 28 100.0 32 ............................ GGTCTCGATGTGCTGGTGGGTATCCCGGCTGA 26972 28 100.0 31 ............................ TCACGTCATTTGTACCAATTTACTGACAACA 26913 28 100.0 32 ............................ ATTAGCGCAGATAACCCCAACTCGGAAGCTCT G [26912] 26852 28 100.0 32 ............................ TCCTATTTTTAAATAAATCATACACCTATGCA 26792 28 100.0 32 ............................ GTTGATAGCTGGCGAGATAGCAGCGGTAAGCT 26732 28 100.0 32 ............................ TGTCGTGTTTCATGTAGTAATCTATTGCAACT 26672 28 100.0 32 ............................ ATCAGGAGTACGCAAGAGCCGGACACAGATAA 26612 28 100.0 32 ............................ ACCTATGTGTTCTGCCGACTCTTTAACGTCCA 26552 28 100.0 32 ............................ AATTAGCGAACAACGTAACATTGTTGATTCTG 26492 28 96.4 32 ...........C................ ACTCCACATCCGGCGCTTGATTCACATCTACA 26432 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTACCGTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGATTGATATCCAGCCAATTCCCCAAGAAACTAAGTACCGCTGTGTCAGCCGAGTGCAGGTTAAAAGCAGTGCGGAACGACTTCGTCGTCGTGCTATTAAAAAGGGATGGTTAACGGGGGAACAAGCTCGGCAGCGTATTCCTATCAGCAAAGAACAACGTACTCATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAATTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTGAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //