Array 1 5570-138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJMQS010000027.1 Rubrivivax sp. JA1024 spades_K_17_127_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5569 28 100.0 32 ............................ TGGACGGTGGAGCGCACACCCAGGGCGACCGG 5509 28 100.0 32 ............................ TCGATCTCGAGTTCGGCCGCGGCGAGACGCTG 5449 28 100.0 33 ............................ TCACAGACTGAAAGCCGGCCATAGGCTGTTCAC 5388 28 100.0 32 ............................ TTGCGCTACGACGATGACCGGCGGGCGATGGC 5328 28 100.0 32 ............................ GCCGCCGATGCGCGGCGGCCGACGTAGTAGGC 5268 28 100.0 32 ............................ GCGCCGACGCCGCCCACGACACCAGACGCGAC 5208 28 100.0 32 ............................ ATGCGGTACACCCTCCGATCCATCTTCCACAC 5148 28 100.0 32 ............................ TCACCGATGGCGTTGTTGTCTGCCGCGTCGAT 5088 28 100.0 32 ............................ GCATGGAGCTGCAGATGGGGATCGAGGACCGG 5028 28 100.0 32 ............................ AAGCCGCCCGAGGCCCAGCAAGCCATGCGCGG 4968 28 100.0 32 ............................ TACTACAAGCGCCGCGGCGGGGCGGCGAGCGC 4908 28 100.0 32 ............................ GGTGACGGCGGTGTCCACCTGGATGACCAGAT 4848 28 100.0 32 ............................ GGCGGCAAGTCGGTCACGTGCACGGTGTCGTC 4788 28 100.0 32 ............................ TGCACACGGTCCTGGCCGGTGCCGTCGAACTC 4728 28 100.0 32 ............................ GCCCAGGCGATCGGTGCGGGCGCGGTGGATGC 4668 28 100.0 32 ............................ ACACCAGCGCGCCCACAGCCGCCGCAGCCAGG 4608 28 100.0 32 ............................ TCACCCGTCGTCGTCGTTGCCGGCGGCGACCG 4548 28 100.0 32 ............................ GTCTTCGTCGCCACGGCGCCGCCTGAGACGAA 4488 28 100.0 32 ............................ TCTGCCGCCATCGCCAAGGCGACGCTGGTCGC 4428 28 100.0 32 ............................ GCCACGACCGTGAGCGCCTCGCGCACGACGGC 4368 28 100.0 32 ............................ CAGGCGCGCCGCGATGCGGTCCCAGGTGTTGA 4308 28 100.0 32 ............................ GGCGGGCTCGGGCTCGCCGCCGGACCTGAAGA 4248 28 100.0 32 ............................ AAGGGAACGCGTACATGACGAACCCGAGCGGG 4188 28 100.0 32 ............................ CGCCGATCCATCTTCCACACGTAGCGCACGAG 4128 28 100.0 32 ............................ GTTTTCCTTCGCAGAATCAAGCACTTGCGAAG 4068 28 100.0 32 ............................ TAGCATCGCTCTGCATGAGCGACGCAGGGAAT 4008 28 100.0 32 ............................ GCTGAAGTTTGCCGGCGCAGCCGCCATTGGCG 3948 28 100.0 32 ............................ AGCGCGCGATGCAGGACTTGTCCCATCTCGCT 3888 28 100.0 32 ............................ TGGTCGTTCGGCCCGCAGCCCAGCATGACAAG 3828 28 100.0 32 ............................ GACTACAACGGCGGATGCTGCTCGAAGGACCA 3768 28 100.0 32 ............................ ACGGCGAAGAAAACCCGGCTACAGCCATTGCT 3708 28 100.0 32 ............................ GGCACCTTCGGCACCGGGTGGCCGGCGACGGC 3648 28 100.0 32 ............................ GTCGAGAAGCTGAAGGGCAAGGCGTGATGACG 3588 28 100.0 33 ............................ CCCGTGAACAGCTTGGGACGGCTCGCCCGGTGC 3527 28 100.0 32 ............................ CACTTCGACGCTTCCAGGTGGCCCACGTTGTC 3467 28 100.0 32 ............................ CGAAGCGGCCGAGCGTGGCTGCGCTGTGCTCT 3407 28 100.0 32 ............................ TTTCTCGACCGGCCGGCCCTTGGCGTCGCGGA 3347 28 100.0 32 ............................ TTGAACGCCACCGCCCCGCCGCCGCGCAGCTC 3287 28 100.0 32 ............................ TGGCCTCGATGCAGGCCCAGCGGTGCACCAGC 3227 28 100.0 32 ............................ TGCCGCACGGCCCTGCGGCTGCGCGCCCTGGC 3167 28 100.0 32 ............................ AGGCCGCGGCTGCGGATGCCTTCGTTGTAGGC 3107 28 100.0 32 ............................ GACGAAGGTCACGGTTTGGCCGGCGGCCATCT 3047 28 100.0 32 ............................ GCACCGCATCAGGCGGCGCACCGACAAGCGTC 2987 28 100.0 32 ............................ CTGCTGCGGGGTCGTGCGCGAATACAGCGCAG 2927 28 100.0 32 ............................ TGCGCCAGGAGCAGGCGGCAGCGGAAACCGAG 2867 28 100.0 32 ............................ ATCGGGATTCCCTTGAGCACGTCCGGGAAGAC 2807 28 100.0 33 ............................ GCGCAAGCCGCCGAAGTGGGCCGTGAAGAAGGG 2746 28 100.0 32 ............................ GATGCGCCGCCGCTCGTCCAGCGGACTGCCGC 2686 28 100.0 32 ............................ GTGACCAGCATCACGTAGAACGTGTCGGTGTC 2626 28 100.0 32 ............................ AAAGGCGGCCGGCAAAGTCCTGCCGCATGAGC 2566 28 100.0 32 ............................ ACGACGAACACGGGCGGCGAGAACGCCGCACA 2506 28 100.0 32 ............................ AGGTTGCCGAAGCGAACGTCACGGTGACCTTG 2446 28 100.0 32 ............................ ATTTTCCAGACGTAGCGCACGAGCGCCCAGGC 2386 28 100.0 32 ............................ GCCCTTCGCCTTGATCGCCTTTGTCCGGAGGT 2326 28 100.0 32 ............................ ATGCGCCAGGTCTTCTCGACGCCGGCGGGCTT 2266 28 100.0 32 ............................ ATCGCCGGCACCCAGGCGATCGTGGCGGAGGA 2206 28 100.0 32 ............................ AGTTCGCGCAGCTGCTGGATGCGGGTGGCGTC 2146 28 100.0 32 ............................ CAAGAAAGACCCGCCATTCCATTCAAGGCCGC 2086 28 100.0 32 ............................ GCGTACGGCCTCGCTCGGGCTGGCGCCGTCAG 2026 28 100.0 32 ............................ TGCAAGAGCTTGTCGCCGACCGCGATCAGGAG 1966 28 100.0 32 ............................ AGCTCGTCGAAGGCGCTGCCGCCCAGCTAGGC 1906 28 100.0 32 ............................ TCGGCCCGGACGGCCGCTACATCCACTCGTCT 1846 28 100.0 32 ............................ TACGTGCCGCCTGCGCGCGCCGATGAGGTCGT 1786 28 100.0 32 ............................ AGCCCGAGCCCAGCTCGGTCTGCGTCATCGGC 1726 28 100.0 32 ............................ TCGCCGGCGGGCACGAAGCCGGCGCGGCATTC 1666 28 100.0 33 ............................ TGACCCAGGGCTCGCCCAAGTGGCTGGCCTACC 1605 28 100.0 32 ............................ CGCGAGCACGGGCGCCACGTCTTGCGCGCCAA 1545 28 100.0 32 ............................ AGCATGTAGCTGGAGTCGGCGGCCCTGAACTG 1485 28 100.0 32 ............................ CAGGACGTAGGCCAGCGGCCACAGCACCAGCA 1425 28 100.0 32 ............................ GCCCGACGCACGCCATAGGCGCCGGCGAAATC 1365 28 100.0 32 ............................ CGTGGCCGACGCTGCCCGCCTGGCGGCGCTGG 1305 28 100.0 32 ............................ GACGGCGTGGCGGTCATCTACGCCAGCGGCGC 1245 28 100.0 32 ............................ CGACAGCGGGAACTTGATCTGCAGGCTGTCGA 1185 28 100.0 32 ............................ TGGGCGCCTGGCCACTGGCCGAGTCGATCGAG 1125 28 100.0 32 ............................ ATGCGCGCGAGACAGCCATGCGGTCGCGAAGG 1065 28 96.4 32 .......C.................... AGATGGAGCTGGTCGGGTTGCCGATGAACAAG 1005 28 100.0 32 ............................ GCGATGCTGGCGATGTCCAGCGCCTTGCGCTC 945 28 100.0 32 ............................ GCGCGCATCTCGACGGCACCGACGACCCGAAG 885 28 100.0 32 ............................ CGACCGTCTGCTTCTTCGACGAGCCGCCCACC 825 28 100.0 32 ............................ CGCACCTCGCAGCGCAGCTGTTCAACACGCCG 765 28 100.0 32 ............................ TCGGCCGGCACTTCGCGCTCATCGAGCATCGG 705 28 100.0 32 ............................ AGCCGCCTAGCGAAGGCGTCAGCAGATACTGG 645 28 100.0 32 ............................ GCCCAGGTAGGCGGCCGACGCCGCCATGCTGT 585 28 100.0 32 ............................ ATCAGGATCTGCTGGCACTGCGGAACGTGGTG 525 28 100.0 32 ............................ TTGAGCCCCGTGGCGCGCTCGAACCCGTCGAC 465 28 100.0 32 ............................ GACGATCTCGTCTCCCTCGACCACGTCGAGCA 405 28 100.0 32 ............................ ACAAGCTGATCGCGGGAGAGCGTGACGCCTGG 345 28 100.0 32 ............................ GCCGTCGCGCGGCACACGGGCCTGTCGATCGA 285 28 100.0 32 ............................ ATGGTCTGGCCCTACATCGTCGCCATCGTCGT 225 28 100.0 32 ............................ TACATGCGTCGTTTCAAGGGCAAGGACGAAGA 165 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 91 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGGAA # Left flank : GCTGAATGCGCTGCAGTCGACCGGCTGGTCGCGCCGCCTGGACGACTACGCGGCCGTGCTTCCGATGGCGGTTGTGCCGGCAGGCTGCGGCCATCGCGTCGTCAACCGTGTGCAGGCCAAGAGCGGCGTCGACCGCATGCGCCGGCGCGCGATGCGACGCCATGGCTACGACGCGGCCGAAGCTGCGCAGCGCATTCCCGCCACGGCCCAGGAACTGCTTTCGCTCCCGTTCGTGACCCTCGGCAGCCGCAGCACCGGACAGGCGTCGTTTCCCTTGTTCGTGCGGCACGGACCCGTGCTGCCGGAGGCGGTGCCGGGGGCCTTCAACAGCTACGGCTTGAGTGCCGAGGCGACGGTGCCCTGGTTCTGACCCTTTTCCCGAGGCGCCGTGGAGGCCCTGGGAAATCAAGCACTTGGCGGCCGATCTACCGAAAGGGGATCGGCCGTCTGTCGTTGGGAATCGTTTTGGAGATCAGGCCCTTAGGATTGGGTGCGAGCTA # Right flank : AGACAACGGCGGTCCTGATTAGCAACGTGCCTCAGCAGTCTCACGCAGTGAGCCAGTGAACTTCTACGCTGGCAGCACCGCTCACGAGGAGACGCTGATGGCGATGAACCGAATCCAGTTCCAGCCCGGCCTGTCGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 738-4487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJMQS010000006.1 Rubrivivax sp. JA1024 spades_K_17_127_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 738 28 100.0 32 ............................ GAGCGAGCACGGCATCGCCCGCACGCAGTCTG 798 28 100.0 33 ............................ GAACTCGTCCATCGTTCCTTTGTGCGCCACCGG 859 28 100.0 32 ............................ GCCGCCAGGTCAGCCGCCTTGCGAGCCATCGC 919 28 100.0 32 ............................ TCCTGCGGCTGCTGCGTCCACGGCAGCGGTAG 979 28 100.0 32 ............................ TGGCGCTCGCCAGCGTGGCGGTCGTGCAAGTG 1039 28 100.0 32 ............................ GCCAGGTCCAGGTGAGCGCGCTGCGCTTCTGC 1099 28 100.0 32 ............................ GCCGGCCGCCTGACCATGGCCGCCCGCACCGC 1159 28 96.4 32 .....A...................... GCGCAGTCGTGGTCGCAGTTCAGCGAGGCCGA 1219 28 100.0 33 ............................ CGGTTGGGCTGCTTGAAACCCCAGTACCCTTCC 1280 28 100.0 32 ............................ GCGACGGCCAGCACGCGGGCGGCGGCGTCGGC 1340 28 100.0 32 ............................ TGGACAGTTCACGCGAGGAGTTCAAGTTCACC 1400 28 100.0 32 ............................ TCGATGCGTGCCGATGTCGCGAAGTGGGCTGC 1460 28 100.0 32 ............................ ATGCTGTCGGCGATGGCTCGCATCGGCTTGCG 1520 28 100.0 32 ............................ TCACCGGCGGCGGCGAGTTCCGCATCTACTCC 1580 28 100.0 32 ............................ AGTCAGCGCCGTTGATCGTCGTCTCGGTGCGG 1640 28 100.0 32 ............................ TTGAAGTTGAGCTCGAACTCTTTCTCGGCCAT 1700 28 100.0 32 ............................ AGCAGCAGCGCGCTGGCCTGCCTGAACACCTC 1760 28 100.0 32 ............................ GCAGCGTGCCGGCCGGGCGCAAGGCGATCTAT 1820 28 100.0 32 ............................ ATGCCAAGTCGCCAGCGCGATTGACGCTGCTC 1880 28 100.0 32 ............................ AAGCGGCGACTACTCGGCCAGCGGGTCGAACA 1940 28 100.0 32 ............................ TGGCGTTTCACCGTGTGCGCTGTCAGTGAAGA 2000 28 100.0 32 ............................ CGCGTACCGCAAAGACGGCGCCTGGCGCTGCG 2060 28 100.0 32 ............................ GAGCTGGCATACCGGGCGCTCACCGTCGACCT 2120 28 100.0 32 ............................ GCCTCGCTGTCGAGCTGCGTGCCCTTCATGCT 2180 28 100.0 32 ............................ GTCCGGCGCGGCGGCGAAGTCCAGGCTGATGC 2240 28 100.0 32 ............................ AGCGCCGCATGCTGGAAGCTCAGGAAGACATG 2300 28 100.0 32 ............................ TCGCTGCTCGAGGCCTGGATGGACGGCCTGGG 2360 28 100.0 32 ............................ TTGAGGCCGTCGCAGGCTTCGGCGCGCGTCAC 2420 28 100.0 32 ............................ CGTCGCCCCGAGCGTCCAGCAGACGCTGGAAT 2480 28 100.0 32 ............................ TTGGCGACTACACCTACGCCGACACGACCGAC 2540 28 100.0 32 ............................ AGCAGCGGCACTCCGGTGATGTTGTACGCGCC 2600 28 100.0 32 ............................ TGGGAGCGCCGCAGACTCGGCAGACACATTGG 2660 28 100.0 32 ............................ GTCCCGGGACGCTCTGGGACGCGATTTCGGGC 2720 28 100.0 32 ............................ GCCCGACGCGGTGAAGGTAGACCGCTCGACGC 2780 28 100.0 32 ............................ AAGGACACCAAGCCAGCCCGCGACGTCCAGGA 2840 28 100.0 32 ............................ AGCACGTCGAGCACAACGATCAGCACCGTCGC 2900 28 100.0 32 ............................ TTCGCCGCAAAGTAGTCTCGGAGCGACATTCC 2960 28 100.0 32 ............................ CGAGGGTGGGGGCGGGGCGGCGAGCGCGAGCG 3020 28 100.0 32 ............................ GCCACGCGTCGATCGGGATCGGCAGCGCGTTG 3080 28 100.0 32 ............................ ACTTCACCGCCTTCTCGGCATCGGCGAAGTGT 3140 28 100.0 32 ............................ GGCGTAGGGTCGCTCCAGCAGCGCGGCCACGC 3200 28 100.0 32 ............................ GGCGGGTCTTGGGTCCAGGGCTGGCCCGGGAT 3260 28 100.0 32 ............................ GCCTCGCACACGCCGTAGCGCATCAGCGGCCC 3320 28 100.0 32 ............................ ATCGACCACGCGATCTCGCCCGAGTCCGAGAC 3380 28 100.0 32 ............................ TGAAGGCATGGATCAAACGTCAGTGGGAGTGA 3440 28 100.0 32 ............................ CGCGTAGCGCCGTGGGCCAGCGGTTCGCGGCA 3500 28 100.0 32 ............................ TACGTGCGCTGGTGCTGTGCCGCCTGCCGTGA 3560 28 100.0 32 ............................ TTCGCGGGCTGCAGAGGCGGCGGGTCTTTCTG 3620 28 100.0 32 ............................ GCTGACGGATGAGCAGATCGACGCCGAGTTTG 3680 28 100.0 32 ............................ AGACAGTTCAGAGACTTGGTCGCGCAAGATGC 3740 28 100.0 32 ............................ ATGCACTGCATGAGCGTCATGCTTGCCTCGCT 3800 28 100.0 32 ............................ AGTCAGCGCCGTTGATCGTCGTCTCGGTGCGG 3860 28 100.0 32 ............................ ACGCCGATGCTCCCGGCGTAGCCGGTGCTCGT 3920 28 100.0 32 ............................ GCTCGGCTCTGGAGCAGACCGTATATGGACGG 3980 28 100.0 32 ............................ GGTCGTAGCGCCACGGGTCAGTCAGGCCCAGG 4040 28 100.0 32 ............................ GACGCTCTGCTGACGGGAGAGAGCAATGGGTG 4100 28 100.0 32 ............................ AAGGACGGCATCCGCGTCACGCACATCTTCGC 4160 28 100.0 32 ............................ ACGACACATCCGCCGCATCAGCGTGCGCGCAG 4220 28 100.0 32 ............................ TCCGGAGGCAGGACTTCTGCCCAGTGTGTGTA 4280 28 100.0 32 ............................ CACGCAGCCAGTGCAGACGTCTCCATCGACTG 4340 28 100.0 32 ............................ TCTACTGGCAAGGCTGGCGCATCTCTTCGATC 4400 28 100.0 32 ............................ GCTGGCGCCTCCCCGACGGCCGCGACGCGATC 4460 28 78.6 0 ...............TTT..A..G..G. | ========== ====== ====== ====== ============================ ================================= ================== 63 28 99.6 32 GTTCACTGCCGCGTAGGCAGCTCAGGAA # Left flank : CTGGCAAGACGCCCTTCGTCGCCGCCGTCAGCGTCAACGCCGCGGGCCACCCGCTGTTCGTCAAGCTCTCCACCGTCCCGGCCTTCTCCTACGAGGCCATCGCCATGTGGGCCTGCCGCAACCTCGTGCCCGGCTCTCTCGTCCTCAGTGACGGGCTGGGATGCTTCGCCGGGGTCTCGGCCGCTCAATGCCTGCACGCGCCGATCGTTGCTGGCCGCGCCAAGCCCGCTGCCTTGCCCGACTTCCATTGGGTCAACACCGTGCTCGGCAACCTCAAGCGCACCCTCGCTGGCGCCCATCACAGCTTCAAGTTCGGCAAGTACGCCGACGCCTACCTCGCCGGCTTCGCCTACCGTTTCAACCGCCGCTTCGATCTCAAGGGCCTCGTCGCTCGTCTCATCGTCGACGTCGCTCGCGCCGCGCCGAGAACTGGCAAGGTGATCAGGCAGGCTGACGAACATTTCTAATCAGGACGGCGGTTCACGGTCGCCAGCGGTCAC # Right flank : ACTGCCCAGCGTCGAACATCGCCCGCGCAAGCGCGACGCACCCGTTGATCCGGTCGCGCTGCGCGCCCTCCGGCTCGCGCGGTCCCAGTCTTCGTCGTCCGCGCTTCGCCTCCCCGCTCCTAGAATCCCCCCACCTCGCGCAGCACGAGCCCCCGGGCGATCAGACCGGTTGCGTTTCGGACGTTGTAGGCCAAGGGGCGCGAGGTGCCTCGCGCTGGCGCTGGTGGCGTTGCCTACTGCAGCTTGTGCCCCGCCAGCCGCTTCGGGTCGGGGATGCGGATCTCGCGCTTGTCGATGACGATCAGCCCGGCGGCTTCCAGCTCGTGCAGCACGCGCGAGAAGTACTCGGGTGTCAGCGACAGCCGCGACGCGATCGTCGCCTTGCTGACCGGCAGGCTCACGCGCAGGTCGCGGCGCTGGGCCTGGGCGGCCGGCGTCACGCCGGCGTCGGCCAGCGAGAACGCGGCGGCGTCCTCGGCCTCCTCGGGCAGGGCGCGCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //