Array 1 222-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHGM01000122.1 Acinetobacter baumannii strain MRSN19482 MRSN19482_MRSN19482_contig00124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 221 26 92.9 32 --.......................... TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 163 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 103 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 43 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : AGAATAAAAAAAAATA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2442-3427 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHGM01000036.1 Acinetobacter baumannii strain MRSN19482 MRSN19482_MRSN19482_contig00036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2442 28 100.0 32 ............................ AGAAAGCATGGAGTCTTGATCGATACGATCAG 2502 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 2562 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 2622 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 2682 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 2742 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 2802 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 2862 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 2922 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 2982 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 3042 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 3102 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 3162 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 3222 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 3282 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 3342 28 100.0 30 ............................ TAAATGATAGTAACTGAAGTCCTGCGGTTT 3400 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : TAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2-984 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHGM01000037.1 Acinetobacter baumannii strain MRSN19482 MRSN19482_MRSN19482_contig00037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 62 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 122 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 182 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 242 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 302 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 362 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 422 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 482 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 542 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 602 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 662 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 722 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 782 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 837 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 897 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 958 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 96.6 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : CG # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17-1604 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHGM01000051.1 Acinetobacter baumannii strain MRSN19482 MRSN19482_MRSN19482_contig00051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 17 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 77 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 137 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 197 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 257 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 317 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 377 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 437 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 497 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 557 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 617 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 677 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 737 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 797 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 857 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 917 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 977 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 1037 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 1097 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGGTACCAAGAAAC 1157 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 1217 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 1277 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 1337 29 96.6 30 ............................G TTTCCGAAGTTGAATTACACTCGCCAAGTT G [1361] 1397 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 1457 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 1517 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 1577 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= =============================== ================== 27 29 95.6 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : TTTTATTGAAGATCATG # Right flank : | # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 309-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHGM01000095.1 Acinetobacter baumannii strain MRSN19482 MRSN19482_MRSN19482_contig00095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 308 28 100.0 32 ............................ ATTACTGTAACTCAAGACCAATTTAAAGGAAG 248 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 188 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 128 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 68 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AATTTTAGATGAAACAAAAGATAGCAGGATTATGTTCGTCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7-875 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHGM01000052.1 Acinetobacter baumannii strain MRSN19482 MRSN19482_MRSN19482_contig00052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 7 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 67 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 127 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 187 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 247 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 307 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 367 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 427 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 487 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 547 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 607 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 667 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 727 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 787 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 847 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= =============================== ================== 15 29 97.9 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGCAAG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //