Array 1 281-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMPO01000012.1 Methanobacterium formicicum DSM 3637 Contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 280 30 100.0 36 .............................. GGTTTATTCACACTCACAACTGAAATACACTTTGGG 214 30 100.0 40 .............................. TATTTTTCACTGTTTATTCGAATATTGCATGTGTTATCAG 144 30 100.0 35 .............................. CAGAAACAGTAAAACAGGCAAATGAAACGTACGGC 79 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 4 30 100.0 37 ACTAAAATCAGACCATATTGGGATTGAAAT # Left flank : TGAACTGAAATATATAAAAGATAATTTAACAAAGATTATGAATAAAAATAAGGATTCAGTGATAATTTACACGCTCAGAACAGAAAAAGCATTGAAAAGAGACGTGATGGGTATTGAAAAAGCACCCATTGATGGAATACTATGATTTCATTTTCTTTTTTACCCCTAAATTTCATGAGATAACTTTTTAGATGTTAATGGGTTGTAATCACCTGTCGTCTATTTAATGGTATGGAATTTTCTTTTAAAATAACTTCAATTTATTTAAATCCCCGATCAATTCTTATCTATTTTATGATTCTTTTGTTGAGTTATAACTCATCTAAACTTCTTGAATCATAATTTTGATATAAATTTCTGAGGTTTTTGGTGAAAAAACCTAATTTTTAAACCTCGTCGGTCCATATAAAAGAATTGGCTAACTGGGGAACGACAAATTTATCTATAAAATTGGGGATATAATAGTAAATATTGGGCAAAATAGGGCAAATTTCGGCCCT # Right flank : TCAGCTTATGGTCTCCCCTCAGAAATGGTTTGGGGAACACTAAAATCAGA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTAAAATCAGACCATATTGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 60-1993 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMPO01000018.1 Methanobacterium formicicum DSM 3637 Contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 60 30 100.0 36 .............................. TTACTATCAATGTATGCAACAGTAGCAGCAGCACTA 126 30 100.0 36 .............................. ATTTTTTTCACAAATCAACACACTAAAAATATTCAA 192 30 100.0 36 .............................. CTGATTGAACAAGCCCTGAACAGTAAACAAAAAGGA 258 30 100.0 36 .............................. CTTCGTTATACTAAACTATTACGAAGTATAATTTTC 324 30 100.0 36 .............................. GGGTGTAACCCCTAATCAGATGTTCGGATTGGAAAC 390 30 100.0 36 .............................. AGATAAAGGTGTTTTCTATGTCATCCCCGTTATTTA 456 30 100.0 35 .............................. CCCAAAGAGGCGATCGCACCTGTAAGCCAGGTTAT 521 30 100.0 36 .............................. CTTTTTTTGTAGTTGATTCTAAAAGCAAAAAGTCAA 587 30 100.0 36 .............................. GGCATTCACCGGACCTTATAGAATACCCTGAACTGG 653 30 100.0 35 .............................. ATCGGCTAAACGGCGATGGTGAAGTGGTGTATCTT 718 30 100.0 35 .............................. ACTGAAAGATTACAGGTCAATATAGGAGCAATAGG 783 30 100.0 36 .............................. TATTCTTATTATTGGATAGATTGGAGACATAACCCA 849 30 100.0 35 .............................. ACCAGATACTGAAATCGAATTCATCAGCAAAAGAA 914 30 100.0 35 .............................. TCCAGATACTGAAATCGAATTCATCAGCAAAAGAA 979 30 100.0 36 .............................. CAAGTCCCTCTTTAGCAAATACTCCACCTGGTTCAT 1045 30 100.0 38 .............................. ACTTACGTATGGTGGTTAAAAATGGCAAGAATATCAGC 1113 30 100.0 36 .............................. AAGTCTTTTTATACAGGTCATGGAAGAATAATCCTA 1179 30 100.0 34 .............................. TATCCTCAATACTCAAAATTGCATGTTATGGTAT 1243 30 100.0 35 .............................. ACCTTAGATAGTCTAGATCTAAAATTCAAAGGAGG 1308 30 100.0 36 .............................. GTCAAGCAATGGGTAAAGCTGCCCTTGAAACTCAAA 1374 30 100.0 34 .............................. GTATTTAAAATAGTCATACTGGTGATATTGTCTG 1438 30 100.0 37 .............................. GTTTTCAAAGTTAGCCCAGACAACATTTGGCTCTTGA 1505 30 100.0 37 .............................. TGGTCAGTTTGGGAATGAAACTAAAAAGACCATCTTA 1572 30 100.0 36 .............................. TCTCCTTTAATGTTTTCAGGTATTGAGTTTAAAACG 1638 30 100.0 35 .............................. CTCCCATCTCGGACTATTATCTTTGATGAGTCTAT 1703 30 100.0 36 .............................. TAAACCAAAGAAGGTAAGGTTAAAATGGGTTAATTC 1769 30 100.0 34 .............................. CAGTAGGATTAAAAAGAATTAAATAATCAAATGG 1833 30 100.0 36 .............................. GCTTATTATGCGAAACATTATCTGAAGCTCCAAATG 1899 30 100.0 36 .............................. TTTGAAAAACTAGGGATAGACGCAGGAATGGCACTA 1965 29 96.7 0 ...-.......................... | ========== ====== ====== ====== ============================== ====================================== ================== 30 30 99.9 36 ACTAAAATCAGACCATATTGGGATTGAAAT # Left flank : TCAGACCATATTGGGATTGAAATAAGATGAAAGTGGTAATCCTGTTCCCGGACCATTGGA # Right flank : TAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTAAAATCAGACCATATTGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 900-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMPO01000022.1 Methanobacterium formicicum DSM 3637 Contig22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 899 30 100.0 37 .............................. TAGTACCAGTCATAGGCACACCAGCAGTTGGAGAAAA 832 30 100.0 37 .............................. GGTATCTTATGAGTTTGAAAAGGCTTCTCCATCTTTC 765 30 100.0 36 .............................. ATATAGCATGGGAAGAATCAGTTATAGAGGCCCCCG 699 30 100.0 37 .............................. ACAGGAATATTCTGGAGTCCAGGAACACACCACATGT 632 30 100.0 35 .............................. TCTTGAAGATGAAGATAATAAAGCACTTAATGAGG 567 30 100.0 35 .............................. GTGGACAATAAAGGAGATATGAGATATAAATCCAG 502 30 100.0 35 .............................. GCCAAACCTCAATTGATAGTTATGATAGGTTATGC 437 30 100.0 37 .............................. TTATATTCCACCTCTCATGTAGGGAAAATTAATTTAA 370 30 100.0 36 .............................. TCCTTTTACCTCCCACAATTCTTAATCTAATATAAT 304 30 100.0 34 .............................. TCATTCTTTTAAAACAATTTACATGATATATGGG 240 29 96.7 36 ...-.......................... AGTAGGAGATAAACAGGGTCACCATCGCCGTTGTAG 175 30 100.0 36 .............................. TATTGAATGGAATAGATGAATCCTCGGTAATCAGGA 109 30 100.0 37 .............................. GTGGTTATGGCTTCTTTTGCTAAATTAACAAATTCAT 42 30 100.0 0 .............................. | G [20] ========== ====== ====== ====== ============================== ===================================== ================== 14 30 99.8 36 ACTAAAATCAGACCATATTGGGATTGAAAT # Left flank : GACCATATTGGGATTGAAATTAAAATGAAACAATGCCCATAATCATTATTAGTGGTCA # Right flank : TTTCAACACTGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTAAAATCAGACCATATTGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 45-870 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMPO01000023.1 Methanobacterium formicicum DSM 3637 Contig23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 45 30 90.0 37 CTA........................... AGGGTTGGATCAAGAGTTTTAAGAAACCCTTGATTAA 112 30 100.0 35 .............................. TTCGAAAACTCTTTCAGCTGCTTCTAATGTTGTTG 177 30 100.0 36 .............................. ACTAGGGATATTTATCGTTGGTCCTGGGACTTATGG 243 30 100.0 37 .............................. TCTTCCACAGCAAAGGTGGAGAGGATGGAAGTTCAAT 310 30 100.0 38 .............................. GTAAATAACATTGAATACACTAACATATTAAGCTCTGA 378 30 100.0 36 .............................. CTTGTCATGTTTGTGCTCGTAATATCTTCAAGATAA 444 30 100.0 36 .............................. TACAGACATGTTGAACATCTATTTGGGTGATTCTCC 510 30 100.0 37 .............................. AATGTCAGCTGCTGCCAATGCTAATGATTTCACTAAT 577 30 100.0 36 .............................. ACAGGTGCCACATTAGAGATTGGAAAAAGAGTTCGT 643 30 100.0 35 .............................. CTGCTAAATCTGGAGTGTCGTAAGGTGTTGATCGT 708 30 100.0 36 .............................. CATTACAACGTAACTTTGCATGGGAAAATGTAAAAC 774 30 100.0 37 .............................. GTGGTTCAATGTGGAAGTGCATTTGAAGCCATAAGGA 841 30 90.0 0 CTA........................... | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 98.5 36 ACTAAAATCAGACCATATTGGGATTGAAAT # Left flank : AAAATGGGGCATAGTACTGGGTGGTGTGTAAAAACTGGGTACGAC # Right flank : TG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTAAAATCAGACCATATTGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 1923-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMPO01000019.1 Methanobacterium formicicum DSM 3637 Contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1922 30 100.0 36 .............................. CGTGGAGATAGGAGTAAACCGGCCAGGAAGCCTCTA 1856 30 100.0 36 .............................. ACGTATATACCCGGATTCCATGACCGCTTATGTTAC 1790 30 100.0 36 .............................. TCTTTTGATAGTGTTCTTTCATTGCACGCATTTCTG 1724 30 100.0 36 .............................. GTTCCTTCAAATTCTAATGTTGCCGCTGATCCTGTC 1658 30 100.0 36 .............................. ACGAACATTTAACTCATGCTGACCACTGTATGCATT 1592 30 100.0 37 .............................. GATGCCAGAGGAGGTAAGTATGCAAAGGTTTACGGCC 1525 30 100.0 36 .............................. TAGGTATTACTCCCAGTAGTGATGAAACCTATACTT 1459 30 100.0 36 .............................. ACATATTCTAATTTGTTAAGGACTTCGACAATATTC 1393 30 100.0 37 .............................. GGTTAAAGCGGGGGATGAGTATGTCCTGGTTGTGGAC 1326 30 100.0 37 .............................. TCTTTAGGAATGAGATTAATTTATGACAAAGTGGCCG 1259 30 100.0 34 .............................. TCTACCTTCACTTCATACTATATTCTTCTTACTT 1195 30 100.0 35 .............................. GAAATATAACTTTTCATGGTTTCACGGCTACGTTT 1130 30 100.0 35 .............................. ATATAATCCATCAACATATGTTTATTTCACAAAAT 1065 30 100.0 36 .............................. GGTCCAGAGCTGCATACTGAAAATAACTGGCGTACC 999 30 100.0 37 .............................. ATGGCTTCGGAGGTGAAACTGGATCCTGGTGCACTTG 932 30 100.0 37 .............................. ACACAAATACAATTAAACTATATCTCAATGGAGTATT 865 30 100.0 37 .............................. CTTTTAAGGTCGAATAGTATATCCTCTGTGGTTGAAG 798 30 100.0 36 .............................. TAGCTCACGCTAAACTGTTCTAAATTGAAAAAAAGA 732 30 100.0 37 .............................. TAGCGGACTTCCAGGATCGGATTCCTGGAAACAATGA 665 30 100.0 36 .............................. AGTCCAAACCCGCAACGTGCGTTAATTTCCTTAAAA 599 30 100.0 37 .............................. GCTTTGACATTTGCTGCTCTGACTTGATTTGCTGCTG 532 30 100.0 37 .............................. CGATCAACGCTTTTCCTGTCAACAATTGAAGACCTAT 465 30 100.0 36 .............................. GCTGTTAAAACAACCTCTTCAGATGTAACAAAATAA 399 30 100.0 36 .............................. TTTGTCAAATCTAATGGCAATGGAGCACTTAAAACA 333 30 100.0 36 .............................. ACAGCAATGGAAGGAGGCACAAAGAAAGTGGATTGG 267 30 100.0 38 .............................. TCACTATCACTTGAAACTATTTCATATTCAGTTTCAAC 199 30 100.0 37 .............................. TTAATTGATAGTCAACATGAGTACATAAAAAAAGCAG 132 30 100.0 37 .............................. TTTATTTCATACGTCCCCTTCAACTACAACTATTTTA 65 30 100.0 0 .............................. | G [43] ========== ====== ====== ====== ============================== ====================================== ================== 29 30 100.0 36 ACTAAAATCAGACCATATTGGGATTGAAAT # Left flank : AATACGAAGGTTACGGTGGCCACAAATA # Right flank : TTGGGGATCAGTGTTTTTTTACAATAGCTGTTAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTAAAATCAGACCATATTGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 354-63 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMPO01000026.1 Methanobacterium formicicum DSM 3637 Contig26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 353 30 100.0 37 .............................. TCGTTTAAAACAATTTACATGGTTTATGGCAATAGTT 286 30 100.0 36 .............................. GTATGTGGTCAGTAAACTCATGAATGAGTACCTTTC 220 30 100.0 36 .............................. AGTGTTCTGTTAAGGGCCTCATCTAGTTCGTTCATC 154 30 100.0 32 .............................. TATGTTCAGAAATTTGGACCTGCGGACACAGG 92 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 36 ACTAAAATCAGACCATATTGGGATTGAAAT # Left flank : CGGCG # Right flank : TCGGGCATCAGGATTCAGAGTTTTATTAGAATCTGCTACTAAAATCAGACCATATTGGGATTG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTAAAATCAGACCATATTGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 15-1429 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMPO01000010.1 Methanobacterium formicicum DSM 3637 Contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 15 30 100.0 37 .............................. GACGTATCCACTGATAAGAATTAGAATTAGTGTGATT 82 30 100.0 37 .............................. GATGATCCTCACTCTGATTTTATTGTTGAAGAGATCG 149 30 100.0 36 .............................. TTTTCACTATTGAGAATATTTATTATCCTCATGGCT 215 30 100.0 35 .............................. ATTTGCAAATCTCATGACAGTTGCAATATTGCAGT 280 30 100.0 36 .............................. GGGACTGTAGGGAGTTTGTATAAACAGGGAGATTAT 346 30 100.0 36 .............................. ATTAATATAGGGAAATGGGAATTAGCTGGATAAGTA 412 30 100.0 36 .............................. ACTGGAGATAATACGGCCGTTACAGGTGGAGCATAT 478 30 100.0 37 .............................. TCAATTGAGAGTGTTACATGTTTATCTCCAGACCATG 545 30 100.0 37 .............................. GTTTGTTCATCTCATCTGATATTTCAGTTTCTAAGAG 612 30 100.0 35 .............................. TCTTTTAGGTTGGATATAAATGTTTCATAGGTTCC 677 30 100.0 35 .............................. GCCATTGTAATCGAAGATCCTGATAACGTAACAAT 742 30 96.7 36 .............T................ TACAGAACCTAATGTGGGGATCTTCCATCCTAAAGA 808 30 100.0 36 .............................. CAATGTAGACAATACATTTTTAATCCTCTCCAACTG 874 30 100.0 36 .............................. GAAGTAGGTAAAGAACAAGCTTTACGTGATAAACTC 940 30 100.0 36 .............................. GGATGAGCGAGATTTTATAGTGGCCCGGGTACGTGA 1006 30 100.0 36 .............................. TTGGTTGTGAGTTCAAGTCTCACTACGGGCTTCCAG 1072 30 100.0 35 .............................. AACCCTGGGCATGATGGGCGGGGACATTTACACCC 1137 30 100.0 36 .............................. AATGATGGGCCGAGATGCTGCCGGTAACAAAATTCA 1203 30 96.7 36 ....................A......... TGCCATAGAAAAGGAATAATAAACCAATGAATCCAA 1269 30 100.0 35 .............................. CGACCTTTGTTGAAATGTTGAATGAGAAAATTAAT 1334 30 100.0 36 .............................. GAACCTGGCCTAATACCTTAGTAACTCCATTACTAA 1400 30 76.7 0 ...............A.....A...TGGGG | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 98.6 36 ACTAAAATCAGACCATATTGGGATTGAAAT # Left flank : AAAGTTGCCAGGCCA # Right flank : GGTATTTAAGAAATTTAATTGTGATAAATATCGATGGTGGCAGAAACCTTCTGAAAAGGAGAAAAAGAGATTATTTATTCCATTATTTAATTAATTAGTTTTTAGTTAGTTGTTTATTTCTCCAAGTTTATAAATTAATTTAAATCAAAATATTGATGTAAACAATATATAAAATACTATTACAACTCCAATAAAAACCAGAATCTTTAATATGGGGCTGTTTATCCCTGCACTGGTGTTAACCATTTTTTCTTTAGCTTTGTTCTCTTCCGTGTTTATTTCACAATCTACTTTGTCATCTATGTTATCATCCACTTCTGAAACTGTTATTTCATGGGTTTCATCTTCTCTTTGATTCATAGTCTCCTTTTTAAGTTTTATCATGGATGTGCCCTCCCTAAATCCCATCTCTTTAGCTGGACTTCCACACTCAGGGCAAACCTCACCTTCCACCCGTTTAACATTACTACAATTTGGATTTGAACACATAGATGTCATTT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTAAAATCAGACCATATTGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //