Array 1 361252-362805 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHNC01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RS14 NODE_1_length_486550_cov_20.823022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361252 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361313 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361374 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 361435 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 361496 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 361557 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 361618 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 361679 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 361740 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 361801 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 361862 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 361923 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 361984 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362045 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362106 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362167 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362228 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362290 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 362351 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 362412 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 362473 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 362534 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 362595 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 362656 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 362717 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 362778 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 378938-380414 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHNC01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RS14 NODE_1_length_486550_cov_20.823022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 378938 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 378999 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379061 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379122 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 379183 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 379244 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 379305 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 379366 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 379427 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 379488 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 379549 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 379610 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 379671 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 379733 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 379794 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [379836] 379836 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 379897 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 379958 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380019 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380080 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 380141 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 380202 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 380263 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 380324 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 380385 29 96.6 0 A............................ | A [380411] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //