Array 1 2417245-2415629 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010280.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2417244 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 2417183 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 2417122 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 2417061 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 2417000 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 2416939 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 2416878 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 2416817 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 2416756 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 2416695 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 2416634 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 2416573 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 2416512 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 2416451 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 2416390 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 2416329 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 2416268 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 2416207 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 2416146 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 2416085 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 2416024 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 2415963 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 2415902 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 2415841 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 2415780 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 2415719 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 2415658 29 100.0 0 ............................. | A [2415631] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2435100-2433914 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010280.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2435099 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 2435038 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 2434977 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 2434916 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 2434855 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 2434794 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 2434733 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 2434672 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 2434611 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 2434550 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 2434489 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 2434428 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 2434367 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 2434306 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 2434245 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 2434184 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 2434123 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 2434062 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 2434001 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 2433941 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //