Array 1 12374-12130 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANIM01000149.1 Leptospira kirschneri str. JB ctg7180000005836, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 12373 30 100.0 42 .............................. AAAAAGTAAATTTTGCTTTTGTTTCCCAGATCGGTCCTGAAC 12301 30 100.0 41 .............................. CAGTTGGGTTGGATCACAGTCAAACGAGAGGGTAGCTGAAC 12230 30 96.7 41 ................T............. AGGCGACGTAGTCTTAAGGCTTGTTTTTTTGCGTCCTGAAC 12159 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 4 30 99.2 42 TTAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : TAAAGAGAATGCTACACCTGATTTTCAGGAATTATTAACAGGCACGAAACTTCTGATTTGGGTTCGTAATGGAAACGAAATAAGTAGAATTACACTCAAAGAAAGAATTCAATCTGCATTCGAGAATCCGAAAACCGTTCTCCGTTTTGGTTCCCTTTGTTTGGGTGAAAGCACCCATCTTGTAAATGATATTCGTTATGCAACGGATTCCGATCAAAAACCTTTTCGAATTTTAAAACCGGCAGAACTCGGAGAAATCAGCCTTCCAATTTGGCCTGATCACGTTGGATCCTTTAATACAAAATGGCGGCAATTTCTAATCGAAGAATCATTAGAATATAGGGATATTCGGAACGATGAATTCATTTCGATTTCTCCTTAAAGCACCAACACGATTTTAACGATAGTATTCGTCCTTTTTGGCGGTCGCCAATATTTAATTTATGTCTTTAGAGTATTGAATACAGTTCCTTTCAAATTCCATTTGAAAATACAGTGGT # Right flank : AAAAGGACAGAAAAATCGGCCGATGCGAAAGCGATCGAAGTGAAAATCCTGCAATGCAACATGATTTCACTATAAATATTCGAATATACTGAATTTATAACATGTTGCGTTGCAGATTGAAACGGAGAGCGCGGTTTTTCTTCGCGGAGGCGAAGAAAAATTCGCCCCGCCTTTTATTTTCCGAATGACCGAAAGCTGAATAGAATTATACCGCAATTCGAATATTATAAAAATAGGAACTTCTTCTTGGAAAATCCTTCGTTTTATTTTTTGATCGAGAATGTTTCTCGACCTTGAATCAAATCGTATTTTTTAACGTTTCATGGTCGCAACCCAATGTGTAATGTTTTTGAATTCAGGATTTTCCTCGAGGGAGGAAAAATATTCTCTCGCCCATAAGAAATGAGCGCTTAAATACTCTTCCTCCTGGAGTTCCCGCAAATGTTGTAGTGCCAGTTCCGGTTGTTTGTTAATCGCAAAATATCCGGCAAGCACGAGTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 469-718 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANIM01000007.1 Leptospira kirschneri str. JB ctg7180000005760, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 469 37 100.0 35 ..................................... CTTTTCTGGATTTTGCAAAGAAGAGATAATAACGT 541 37 100.0 34 ..................................... GTTTAACGCCATGCTTGGGCCTATTGGGCTTGTG 612 37 100.0 33 ..................................... ATCTGCATCAGAATCTAAGTTTGAATTTCCGTC 682 37 94.6 0 ...................................CA | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 98.7 34 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : ATGAGTTCCTACAATTTTAGAAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCCAAACGTATACATGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGTTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCTG # Right flank : AGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGACAGGTCTTTGTTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTAAATTTCAAATGAAAGTATGGCATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGTGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAAATTCTAGTTACGCACATTCCACATAACGACCTTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTGTTTTTCCTCCATTGGAT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 3342-3595 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANIM01000072.1 Leptospira kirschneri str. JB ctg7180000005859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3342 37 100.0 36 ..................................... TCGTGCTCGTAATGAATAATATGAAAGGAAAGAAGT 3415 37 100.0 34 ..................................... ACATCGCTCTCAGGCATCAAAAAGGCTGCTGCAA 3486 37 97.3 37 ................G.................... CATCGTAACCCCGTTACCGGAGGTTCTTCTTAGAATT 3560 36 81.1 0 ................G.......G..T.-.CA...A | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 94.6 36 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTGGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATTTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTTCGGCCGGTTCGCGTTTAAACGTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAGAGCTTTTTCTAATCCATAAACTTGCACCTTTTCGGCCGCT # Right flank : AAACGATTTATTTAAAAAAAATTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCCCTTAAAGTAAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTGAATAAACCATTGTTAAACTTTATAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTGAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTATTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAACGGT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 95578-95324 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANIM01000079.1 Leptospira kirschneri str. JB ctg7180000005768, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 95577 37 100.0 35 ..................................... AGGTCAATGAACTTACGTCATCGTTTATCAAACTC 95505 37 100.0 35 ..................................... TTTTCCTGTTTTTAAAATATAAAAATGCTGCGAAT 95433 37 97.3 36 ..........................T.......... GAATAGTTATCCACTATGAAATAATCCCATATTCGT 95360 37 97.3 0 ..........................T.......... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 98.7 36 GTTTCTTCCTTTGTTTAAGAAGGAAGCGGATTGAAAC # Left flank : TCTACTTCGATAAGCATATATTCTGAAATACAATCCATTTAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAATAAGGCCCTACAAATTTTAGAAACAGATTTAGTTTAGACAAAATTCTATACACTCTGATTCTATGGTTTCTGAATTAGTTAAGTTTTCAAGTCCAGCGCTTGGACAATCATCTCAACAAGAATGAAAGAACCCTTGAGTTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAATCGCTTTTTGCGAACCTGTTTCTCCCGATCTTTTGCGGCCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTGGATTGAATGGGTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : TATGTGGGCGGTCTTACGACCATATTTGCCTACTCCATTAGAGTGAAAACGACAAGCTATGTGACATATTTAACTAACTTTAATTTTTTCTTTTTAGCAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGACCTTTCTTTCTCTATCGAAGAGAACGTAGGTTGAAATTACCACGGTCTTACGACCATATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTTTAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGATTTGAGACTCAGAAATTCCCAAAAATCAAGTCGGCCCGGATTATTTAACTTTTTGTGGTAAATCCTACATTCTCAGTTTTTTACAAACTAGAATTTGACGTTACGCGAAATGGATCAACGCGGGGAACTTTAGCAGAACGCTCTTTCAAACCAAAGCGT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGCGGATTGAAAC # Alternate repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 30200-30524 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANIM01000098.1 Leptospira kirschneri str. JB ctg7180000005819, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 30200 37 100.0 35 ..................................... TTCCGGATTGAAGTAGTAGCCCGCGGGCGCCAATT 30272 37 97.3 36 .............................C....... AGAACAAAAAAAAATTCGCAAACATAGGAATCTCCG 30345 37 97.3 35 .................G................... TTCCAAGCAAGAAAACATAGCTCACGCAATTCATC 30417 37 97.3 33 ..........................T.......... CTCACGTTTACGGATTTAGAATCAGATTGGGGA 30487 36 73.0 0 ..C.......A..G...G..G....TT...A.-...G | CC [30512] ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 93.0 35 GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Left flank : TTATAGAGAATTTTATTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTACTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGACCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCCGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTATTCTTTGCGAACCTGTTTTTCCCGATCAATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTAGCTTAACAATTGTACAGTATGGTGAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : GTGTCTAAAATTTTGTTCCTGAAACGGAGATACTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGAATTGATTGCTCGGAACAATAATTTCTAAGTTTTGTGAGAGCTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAAAATAGGAGTTCCTTTTTATTTTTACGGACCAAAGTTTCTCTTTCGGAGAATATCTGGTTTGGTAAATTCTACCATGAAAATTGAGTATTCGTGGTAGTAGTTCCCACAAATTAAGTCTTTTTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTTATAAAATCGGGGCGAATCCCGCTGCGCTTTCCGCTATAGTTAATAAATTGTATAAAAAAACATAATATGATATTTCGTCTTAAGTTACAATTGATTATAGAACCC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //