Array 1 329-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNKG01000003.1 Bifidobacterium adolescentis strain AL12-4 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 328 36 100.0 30 .................................... GGACACAACTGCATAATTCGCGCATATGCA 262 36 100.0 30 .................................... CCATAAGGCGTTTGACCTTTTCACCTACGG 196 36 100.0 30 .................................... GTTCGTGCCTGCGAGAATGGACTGCGTGTC 130 36 100.0 30 .................................... TCTTCCCGAGCCTGTGCAACCGCGATTACG 64 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTCAGAAGCCTGTCAGATCAATGACCTAGACCAC # Left flank : ATTGCGCTGATATTGTTGACTACAATGCACTATTCCAAAAAGCGGCAATTAAGAAAATAATAGATGAATTTGATGTTGATAAATTAACTAGAGTGCTTGAGTTGCAGGTAGAGTTAAAAACGCTTATTCAAGATGAAATATGGGATGATGATTTGCCTCTGGAAATTTCTTCTTCGCTGGATTTGAAAACTGCGATTTCAATGGCAAAATTACGTGTTGATGTGAGCTCTGTGGGTTCCCTATTTGATAAAATTCAGATGGTGGTTGATACTGCCGGTGCTCTTGCTGAGAACAGGATGCTTGTGACGCTTCATACAACTCAATATTGTAATAACGACCAATTGATTTATTTACATAGAGACCTATTAAAAAATGGTATGCAGCTTCTTGACCTGGAATGCTGCAACAAAAGGGTTACCCTGACAGAAGGAAGAAGCCATTATGTTGATGGAGATTATGTTCAGTTCTCATGAACTGTTCAGGAAGCTCCAAGGCTATCG # Right flank : CCCTAGATTCTTCACAAAGAGGGGAGTAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGCCTGTCAGATCAATGACCTAGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 310476-309978 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNKG01000002.1 Bifidobacterium adolescentis strain AL12-4 Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 310475 36 100.0 30 .................................... GCGATGCCTTCGGTCGAGGTGATCCAGATC 310409 36 100.0 30 .................................... GCGAAACGCCACAAATGTTCATTTTCTATT 310343 36 100.0 30 .................................... GGCTTGCACTCTTTTTCCCCGACAAACGCA 310277 36 100.0 30 .................................... CATTCCTAGGATATCTACATCCGAAAGTAC 310211 36 100.0 30 .................................... GGATTGGAAGAAATTCTGGTCTGCGCTGCC 310145 36 100.0 30 .................................... CGCGTGTGGCGCATCCACGTCAAGCCGAAA 310079 36 100.0 30 .................................... AACGAAAAAATCGTAGCACACTACGCACTC 310013 36 97.2 0 .........T.......................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 GTTTCAGAAGCCTGTCAGATCAATGACCTAGACCAC # Left flank : CTCGACC # Right flank : TCGCGGCTGTGCCTATTTCAAGGCTCGGAATCATATTTTCGAAAGATATGGGATTGATATTCGCGTCGAAGGGAATATACATTTCCTAGACGATTGGGATGAAATGAAAGCGAAATGGGCGTTTTATTTAGGGGTGGCCGATCCGGATTACATCAAACGGGCTGATGAGAATAGGCAAACTCGCTATAGAATCGTGGAAGAAGAACTAATCCGCGTATGGTTGCAGAAAAGACACGGCAAAGAGAAACGTTTTCGCATTTACACCGGCCATCTGACCACCACACAGGAAAGGGAAAGGTTATGGCCCCTGATCGGCAAGTGGCGGCAGCCTACCGACAGTTGAGACCCTATTGCGATTCTCTTCCCGATGGCCAAGTCCAATCCCTCGATGATGGCTTTAATGCAGGAGAACCATACTACTCGCTGAGCTGGCTAATAGCAGACATCCTCGAAAATAACATCGCCGTCCCCCAAGACGTCTTGCTTGACGCCTATGCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGCCTGTCAGATCAATGACCTAGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //