Array 1 67159-61227 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXZT01000002.1 Trichococcus alkaliphilus strain B5 NODE_2_length_336550_cov_1036.93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 67158 32 100.0 36 ................................ TCATAGCGATTGCCGATAACAGTGAAATGTATTGGA 67090 32 100.0 34 ................................ CTTAACCTTAAAATCACGGATACCGACGTTGTTA 67024 32 100.0 34 ................................ TATCTATGCGATGGTGGATAAAGGGTTAGAAACG 66958 32 100.0 33 ................................ TTCAATATCGATAAATTAGCAGAAGAGCGACTT 66893 32 100.0 35 ................................ TTACTTGTCTCAGGATTTAGCATTGAAGCCATCCG 66826 32 100.0 35 ................................ AAATCATCACGCTTGAAAAAATCAAACTTTTCAAA 66759 32 100.0 34 ................................ CTAGTGCCGTGGATAACTCGACGTTGCTATCTGA 66693 32 100.0 35 ................................ GGATTGTTTATGGTCAGCAACCATTTTCGGGATTG 66626 32 100.0 34 ................................ GAAAGCGGCGTGGTAGTCATCAAGGATTGGAAGA 66560 32 100.0 34 ................................ TGTTTCAGTCATGATGAACCTCCTAGAATGTCAT 66494 32 100.0 34 ................................ AGATCCAACGGCCAAGATTCGAACGCCTAAGCAA 66428 32 100.0 33 ................................ CTCACTGACAACGATGTATCTTAATGTTGTAGA 66363 32 100.0 37 ................................ CAGTATGAAGCCCAGGCATGGGAAACAATCACGGCAC 66294 32 100.0 34 ................................ TTGGATAATTACATGGCCACCTTGTCCGGCAGTT 66228 32 100.0 33 ................................ GAGAGCAAACATATGAAGTTGTCGAGTGCTTCA 66163 32 100.0 34 ................................ TCAAACTGTAATTATTATCAACTGAATAACTAAA 66097 32 100.0 34 ................................ ACTTGTTACGGGTATGGATAAAATAGCGACGTTT 66031 32 100.0 34 ................................ GCTGAAGTTCGCATCCAGAAGCGATTGGGCGAGG 65965 32 100.0 33 ................................ TCCAAGAGCGTGCGCAACACGATTCAGGAAGTG 65900 32 100.0 35 ................................ ACTCCGAACCTGCCGCGTAATGTGCAGGAAGAAAT 65833 32 100.0 34 ................................ AAAGACAATGTACTATCGTTCTTCGGAATCAAAT 65767 32 100.0 34 ................................ CATCATGGACGGCGGGCTGACAGCGCGTGTGAAT 65701 32 100.0 35 ................................ AGGTGCAGCTTTGTCAGCTTGCAAGCCTGACAGTT 65634 32 100.0 34 ................................ ATTCATTTGGCTTCCTCCAATTCCATCAGCGTCA 65568 32 100.0 33 ................................ ATCGACGAAACCGGACGGACACGTTACAAGCAG 65503 32 100.0 33 ................................ CGGCAACATGGATAGGACACCATCAACGAGAGC 65438 32 100.0 34 ................................ CACTCCGATAGTTGCATCGTAATTGGCGGGATCC 65372 32 100.0 34 ................................ TCGTGTTCCCACACCCTTAATCGAGCCATCGCTT 65306 32 100.0 34 ................................ CTCTTTGTCGTATGGCTGATAGCGTTGTGTCGAG 65240 32 100.0 35 ................................ CGTATACTGCAATTCCATATCCACTAACTCTTTAT 65173 32 100.0 34 ................................ ATACCCTTGTCAACGAACGACTTCCCGGCAAACA 65107 32 100.0 35 ................................ TCTCGCTGCTGCGACACTTAGCGATAATTGCGCTT 65040 32 100.0 34 ................................ TAAATTGTTTCGTTTCGTCGTCAATGGTATAATC 64974 32 100.0 41 ................................ ATACCGTGATGCCATACGCGCCTTCTCCGTCACCACAGTGC 64901 32 100.0 34 ................................ AGAGCATCTGCACATTTAAACGGTATCAATGCCG 64835 32 100.0 34 ................................ AGCTTTACTACATCGGCGTCAGATATAAGAGTGG 64769 32 100.0 34 ................................ ACAGTCCGGCTATAACGGACCTTTCGAAGCGGCC 64703 32 100.0 34 ................................ CATAGCGATAACGCCAATCAGGATGCCGATTAAA 64637 32 100.0 34 ................................ TACACCTCTCCAATAAATGTTGTTTGTCAGTTTA 64571 32 100.0 34 ................................ GCTTTAAAATGTTGCGTGCCTACATTGACGTTAG 64505 32 100.0 34 ................................ ATAAACAAATGAAAGATAAAAGCTTTAATGAGTA 64439 32 100.0 34 ................................ GAACGATAGCCAATATAGACACATGCAGAATCGG 64373 32 100.0 34 ................................ AAATGATAGTTGAAGCTATTTTCATGCTAGGATT 64307 32 100.0 35 ................................ AAACTAGATGATCCATCCGATGCTTACGAGTTGTC 64240 32 100.0 35 ................................ AGTACCTGTCAGCGTGTATTGAAACCCGCCAGTAA 64173 32 100.0 35 ................................ CTTGGTGATGTGGTCCCTGTCATCGAAGAGAGCGG 64106 32 100.0 35 ................................ CCGTCATTCAGCGTGACAATCGTTCTGAGCACGCA 64039 32 100.0 34 ................................ TATTGGTACGTCAACAAAGCTCCCCTTGGAATAC 63973 32 100.0 34 ................................ TTGTCTGAGTTGGATGGTGTGCCTACCATGCTGA 63907 32 100.0 35 ................................ CGTTCGATGTCATGCTGAAGCTGAATGCTCCGATA 63840 32 100.0 34 ................................ AAGGCTGACCCGTCGCTTGATAGCGAAGGCACGC 63774 32 100.0 35 ................................ ACACTCACCTTGCCTATCACGTCCGCAAACGTCGC 63707 32 100.0 33 ................................ CGTTAAATCAATATCAACCGCTACTGTATTTTC 63642 32 100.0 34 ................................ ACGCTAGGAACGGACTATCAGAACGGCGACATTG 63576 32 100.0 34 ................................ AGGAATGAGCAAACGCCTTGCCACTGACTTCGTC 63510 32 100.0 33 ................................ ATGTACATGCTGTAGGAGATATTCAACTTTTCA 63445 32 100.0 34 ................................ TGCGCATAGCGCGATCAGTTCTGTCCTGCTACCG 63379 32 100.0 35 ................................ TTATCAGCCCATTTCCAGAAGTCGGCAGGATCGAT 63312 32 100.0 35 ................................ GGTACTCTCTCTTTCGGTCAGCCTCTGTACTTGAC 63245 32 100.0 33 ................................ TACCATTATATAAACGGTAAATATCAATGACAA 63180 32 100.0 33 ................................ AATTTTTCTTGGTCGCCTAACTGATCGGCAGGC 63115 32 100.0 34 ................................ TAATCGCGTGGTTGAAAGCCCTTAACAATCACTA 63049 32 100.0 34 ................................ TGGAATCAACTTGAATTTGTCCGTTGACGAGATC 62983 32 100.0 34 ................................ AATTAAGTGTGAGTTGATATTTGATGAAGGTTTG 62917 32 100.0 34 ................................ ACTTGCTACGCCTTCAATCCTCACTGATCTCTCA 62851 32 100.0 35 ................................ ATCCAGAAGGAAGAGAACGGGCACTACAAGCGGGT 62784 32 100.0 34 ................................ AACGCTGCGATATCGTGTTTGCGTGCGGCTATTT 62718 32 100.0 33 ................................ ACGCAACGCATCCTGTACAGCCTCATGAACAAG 62653 32 100.0 35 ................................ AAAAGTCGAGCGCGGGCGCTTTGGCAGGTACGATT 62586 32 96.9 34 ...................T............ ACTGAGTCAACAGTTGGAACAAACAACCGCCATA 62520 32 100.0 34 ................................ TCTGGTGTACTTTTGTCGTACATTTGTACGTCAT 62454 32 100.0 34 ................................ TTCTCCACGCGGCTGTTCACGTCCAAGTGGAATA 62388 32 100.0 34 ................................ CTATTAACGATGTCGAAAAATACGCAAACGTGTT 62322 32 100.0 34 ................................ AAAAAACCAACGAAAACAGAAAAGTATACTCCCA 62256 32 100.0 33 ................................ CGGAAATAGTCGGGCATCTTGTTACGGCGTCCG 62191 32 100.0 33 ................................ TGCGTTATCAAAGTCTGTATCATCGAATCCCAT 62126 32 100.0 34 ................................ GAGGCAACCCTCGACCCGATCGACAAGATGACCG 62060 32 100.0 35 ................................ AGTCTGGATTTTTTGCTATCCATCAGGAACAAATC 61993 32 100.0 37 ................................ AACAATCGCGATCGAACCGACTGCCGTCCGGAAAATC 61924 32 100.0 34 ................................ TTGTAATGCGTCCATCTATTTTCCTCCTTAATTC 61858 32 100.0 33 ................................ ATTGCTGATCTGACTGGCGAAACGGTTGAGGAT 61793 32 100.0 34 ................................ CTGGATGCGGTTATTTTGGAAGAAGCGGATCGCG 61727 32 100.0 36 ................................ GATGGGGATTACATCTGGATTCACTGGATCGATAAT 61659 32 100.0 35 ................................ GACACGATGCCGGCCAGCTTGGCGGCTGTTTCGGC 61592 32 100.0 35 ................................ ACTCTTTCTATGCCGGCTGGGTTGTGGATGCTCAA 61525 32 100.0 34 ................................ CGTCCGGGTCCTGCGAAAAGTCGTAGGCGATGCC 61459 32 100.0 35 ................................ AGCAACCCCTCCAGGGATACGGCCACCACCACCAC 61392 32 96.9 36 .........T...................... GCTACTAAAAAAGGTACAAACGCAATCGCATGGGAT 61324 32 96.9 34 ...........G.................... TGTATAAATTTATCAAGAAAATCCAAAATGAGTG 61258 32 96.9 0 ...........G.................... | ========== ====== ====== ====== ================================ ========================================= ================== 90 32 99.9 34 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : AGAGGAGATTTGGATCAATATCCACCGTTTCTATGGAAGTAGGTGAAGTGTTATTTTAGCATTGATAACCTATGATGTCAGCGTAACGGATAAAGCAGGTAGGTCTAGATTGCGCAAGGTAGCAAAAACTTGCCAAAATTATGGGCAAAGGGTACAAAATTCTGTATTTGAGTGTATTGTGGATAATACACAACTTACCGAATTAAAAATAAAGTTGTTGGATATTATTGATACGAATGAGGATAGTTTAAGAGTGTATATCATCGGTAATAACTACAAAAATAAAGTTGAACACTTCGGAACAAAAAAAGCTATGAATCTGGAGGATGTATTATTCTTCTAGTGCGAACCTGAAGTGAACATAAAAGTACTAGAAGCTTCGCACCTCGAAAATATAATATAATTGTCGTGATTAGTTTAAAGTTTATTGTAAAAACGAGTTATAGTGAGTTTATCTGTTGGTTTATACATAAATTCATTGATTATCGCTATAATTCGCA # Right flank : TAGCCTATTTTGTAAGGAAACAATAGCCAATGGGGGGATGTAGTAGTTGTGACTTGTATGCTGTTTTAGCTCAAAGTACACAGGTCAGCATGGTATCAATCCTCACATAAAAAATATCTTAGTCAGCGAATTATACTATTTCTTCATTCTCCATTAGTTTACAATATCTTTGAGCGTCATCCAAAAAAAATAAGCTCAGCCATTAATCGAACAAATCCTTAGCGGATAATGAGGTGAAGGGGTTGTGTAGTTGAGTGGCTTCAATTTCTTCTTTAGAAGAAACGAGCTTGCCAGGTCCTTCCTTAATCCGACTATGTAACCGGATATCAAAGAGTTTTTCTTCGAGCTCCATATTTCTCTTAACCAGCTTGTCGTAGGTGGCTTTGTTGAGTGTAACAGTATCGGATTTGCTAGGGTTAATAATAAAAGTTGGATCTCCTAATTCTACTTCTTTATTAGCCTCACTAAGATCGCTTACAATGTAACTCACAATTGCTTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //