Array 1 38211-38897 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUFO01000018.1 Bacillus thuringiensis strain AFS057829 AFS057829_114_F5_Contig10_140618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 38211 32 100.0 34 ................................ ACAAGATACGAGAATTTAATGACGTCACCCACAT 38277 32 100.0 34 ................................ TATTGTTACACCTTTAGAGTATCCGAGTAAAAAA 38343 32 100.0 35 ................................ ACAATGGGAAAGTGTTAGGTTATGCACGTTTTAAA 38410 32 96.9 32 .......................A........ GAAGATAGTAGAAGAAATCAAAAAAAGTGTAT 38474 32 90.6 33 .........T.........T...A........ TTTGTTGCTCCAGTCGTTATGATCGTCTTTGCA 38539 32 93.8 33 .......T.T...................... TAGGAGTTATTAATGGCTTTAGATGTTAGACCA 38604 32 90.6 34 .........T.........T.A.......... TACCTCGGGTTTATATTTATCTGGAATGCCCATA 38670 32 93.8 33 ........CT...................... TTTGCAACTAGCTCAATTGTTTTTCCGTTTTCA 38735 32 96.9 34 ....................A........... TACCTCGGGTTTATATTTATCTGGAACGCTCATA 38801 32 90.6 33 .........T.A.......T............ ATAATATCACAATTTTGACAAAATTCAGTCATG 38866 32 90.6 0 A.T.................T........... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 94.9 34 GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Left flank : ATTGAAAATGGAGAAACAGAGAATTTATATCCAGGGATTAATAAACAAGGAATAAGAACATTTTACACGAAACATTCTACAGATGTTGAGAATGAGGTTGCTACTGCGATTCATGTGTACGTTGATGTATTAAAACAAATGAAGCGTGAAGGTGCTGAATTAGCAAGGAAGAAGTAGAACGATGTGATTAGAAGATTTAATAAATAAAATTCTTCATCATATTATAAAACTATACATTCTTGTTTATTAGTTAGCTAATAGCTATGAAAATAAAATTAAATATATCGGTGTACAAGAATGAATTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTCATAATGTATGATGGGGATTTATGATTTTTATACAAAATACTTTAATAAATAAAAATATTTTTATATTTTTGAATAGAATTAACGTATTTGTGATTGATTTTGAGCACAAATCGGT # Right flank : TAGTTTAGTAGATACTCAACTAGAAGTATCTATATCTGCAGTATCTAATACAAAAGTAAACAGTATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAAGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCTATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATT # Questionable array : NO Score: 8.46 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 46875-47039 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUFO01000018.1 Bacillus thuringiensis strain AFS057829 AFS057829_114_F5_Contig10_140618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 46875 32 81.2 36 ......T..CTTGC.................. AAAGACCATTTGACCGAGAATGATAGAAGCAGGGAT 46943 32 100.0 33 ................................ TGGTTATTTTCCATTCGTGTTTTATGCTCCTCT 47008 32 93.8 0 ...........T........A........... | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 91.7 35 GTCGCACCTTAAATAGGTGCGTGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGATCTTGGTAAGGATAAAGGTGCTGATACGATGAGTATGAAGTATCGTGCTGATTTTGGAGTATATGTCTTTTATGGAAGTATTAATACATAGTTAGCAAAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGCATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTGCATAAAGTTTGTTGGTGGGATCATAATTCAAAACTTGGTCAATACTCCTCTGCAAAAGTACACCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATTGATGATTATACTGTATTGGTACATGAATTAGATGGTTTAAAAGTTGAGATTATTGATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACGAAAGTATCCTTATAAAGATATACTCTATCAATTTATTAAAGGAAA # Right flank : TTTTAAGTCGTATACAACAGTAACACACAAAGAATATCGCACCTCTTGTAGGTGTGTGGAGTAAGGCTGATAAGATAATTGATAGTAATTTAGTGTCTCTGTTGGAGTAAGAGAACCTGTTTCAATTCATACAGCAACAAGTGTTGATCCGATTGATATTACTTGTATGCAGATTAAGAAAAGTGTAAATTCTGAGCTTGGGAAGGATAAAGGTTCAGATACAACGGGGATAAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTTATGGAAGTATTAATACACAGTTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGATGATGAAAAATGCACTGGTTCCATTGATTGAAAATGATGCATCAGCAGCACGCCCTGAAGGAATTATAGAAGTACATAGAGTTTGTTGGTGGGATCATATAGTTCAAAACTTGGTCAATACTCCTCTGCAAAAATACATCGTTTATTAGAGGTTAAACGGAATATTGACGAGC # Questionable array : NO Score: 6.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTAAATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //