Array 1 35926-36198 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURK01000112.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002066 CFSAN002066_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35926 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 35987 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 36048 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 36109 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 36170 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GCGAGGTCAATAAAAAATGGTGTGGCTTTACCGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49-687 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURK01000024.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002066 CFSAN002066_143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 110 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 171 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 232 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 293 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 354 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 415 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 476 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 537 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 598 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 659 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCCG # Right flank : GACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16335-17992 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURK01000009.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002066 CFSAN002066_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16335 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 16396 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 16457 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 16518 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 16579 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 16640 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 16701 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 16762 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 16823 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 16884 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 16945 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 17006 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 17067 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 17128 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17189 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 17250 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 17311 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 17372 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 17433 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 17494 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [17536] 17536 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 17597 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 17658 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 17719 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 17780 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 17841 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 17902 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 17963 29 96.6 0 A............................ | A [17989] ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //