Array 1 219942-221800 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCJ01000045.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3246_R1 NODE_3_length_345535_cov_1.10198_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219942 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 220003 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 220064 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 220125 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 220186 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 220247 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 220308 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 220369 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 220430 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 220491 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 220552 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 220613 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 220674 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 220735 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 220796 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 220857 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 220918 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 220979 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 221040 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 221101 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 221162 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 221223 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 221285 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 221346 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 221407 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 221468 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 221529 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 221590 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 221651 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 221712 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 221773 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237911-239387 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCJ01000045.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3246_R1 NODE_3_length_345535_cov_1.10198_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 237911 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 237972 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 238034 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 238095 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 238156 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 238217 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 238278 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 238339 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 238400 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 238461 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 238522 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 238583 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 238644 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 238706 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 238809 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 238870 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 238931 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 238992 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 239053 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 239114 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 239175 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 239236 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 239297 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 239358 29 96.6 0 A............................ | A [239384] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //