Array 1 19653-20475 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAAIRR010000039.1 [Ruminococcus] gnavus strain MSK.15.77 NODE_39_length_23629_cov_222.582, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     19653	    32	 100.0	    35	................................	CATATCACCGGAAGGAGATACCGGTGAATATGCAA	
     19720	    32	 100.0	    35	................................	TCTGCAGTCAGGGACCATAGAAAGTGGAAGCATTG	
     19787	    32	 100.0	    33	................................	TGCAGGAGCAAAAAACGCAGGATGGTCTATACA  	
     19852	    32	 100.0	    34	................................	TTCCAATAGCGGATATGAGGGAGACTGGGAAATG 	
     19918	    32	 100.0	    34	................................	TTTAGCAAATGGTAGTCAGAACAAAGAAAAAGGG 	
     19984	    32	 100.0	    34	................................	ATTGCCGTCAGGATACACAACACTGGCGCAGAAC 	
     20050	    32	 100.0	    33	................................	AATGCTCTTACCTGGTGACGGGAACGCAGTTGT  	
     20115	    32	 100.0	    34	................................	TGGACGATGATATGATCGCAGGAACTGGAGAACT 	
     20181	    32	 100.0	    35	................................	ACCGTCCAGAGTTATGCGAGACCAAGTCGGAAAAT	
     20248	    32	 100.0	    34	................................	AACGTAAAATACAAACTAATCAAAAAGGAGAATA 	
     20314	    32	 100.0	    33	................................	TATGCTCATTTGCCATGGTATGTTTTTGTCTTC  	
     20379	    32	 100.0	    33	................................	CAGGCGGGACTTTCGGATAATTGGATCCATTAA  	
     20444	    31	  90.6	     0	........................-.G..T..	|                                  	T [20472]
==========	======	======	======	================================	===================================	==================
        13	    32	  99.3	    34	GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	                                   	       

# Left flank :   ATCCGGTATTTCTCTGGAAATGAGGCGAAAATGGGATGTTAGTGTTGATTACATATGATGTGAACACAGAAACAGCGGCTGGAAAGAGGAGATTGCGCCAAGTGGCAAAACAGTGTGTAAATTATGGGAGAAGAGTGCAAAATTCTGTATTCGAATGTATCTTAGATAATGCACAGTGTGTTATGCTTAAGGCAAAACTGACAGATATCATCGATGAAGAAGTTGATAGTTTGAGATTTTATTACTTGGGAAATCAATATAAAACAAAAGTCGAACATGTTGGTGTAGACAGAGGAATTTCGGCGGATGGAATTCTTATTATGTAACTGGGGTGCGGATGATAAGCAAACATAAAAATGCTGGGAGATTCGCACCAAAAAAATGCACAAAAATTAGTTGAAGAGGTGAAAGTTAGAGAAATATGATGAGGAAAAGAGAATGATATTGGTAGAATTGAGTAATATTAAAGAATATAAAGCCTAAAATTAGGCAAAATTGCT
# Right flank :  TGTGGTGGACGGGCTGCCGGAAGATGCCGATGATTTCCGGTATCCGGGAGATGCGATCGAACCGGAAATACAATCGGAGTTGGAACGTGCATTAAGCGGGGAAACGGTATTGCCGGAGAAGATTCTGGATACAGACTGGGGAAATATTTTTATTGCTTATTATCCGTTGTATAATGAATCAGGAGAAGTCATCGGTGCACTTGGAATAGAAGTTGCGGCAGATATAGAAGCCGAGGCGGTACATGACAAATCCATTATACAGAGACATGGCAAATACTGATTTTATGACAGAACTAAAGAACAGAAATTCTTATGAGACAGACCGGCAGAACCTGGATGCAAAGAAGAAATGGAATGGCCTGACAGTGGCAGTGATCGATGTGAACAATCTGAAGCTGGTAAATGATCGGCTGGGGCATGCTGTGGGTGATGATTGTATTGTGAATGCAGCACGGGTCCTGCAGAGTGTTGAATCTCAAAAAGTTACGGCGTATCGATAC

# Questionable array : NO	 Score: 9.22
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.00,-5.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-40.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.68,0.74   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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