Array 1 107982-107579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMM010000001.1 Methanomicrobium sp. W14 Ga0466838_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 107981 37 100.0 37 ..................................... ATCATATGTATGGTTTGTAAAAATTGATTTATTTCTT 107907 37 100.0 36 ..................................... TACGCGGTAGGAAGCAGCATACTGTCAGGTATAAGA 107834 37 100.0 35 ..................................... TCAGAGCGGCCGAAGTTACCCGGAGGACACCGCAC 107762 37 100.0 36 ..................................... AATCTCTGAATATTTTGAAGTGCTCTTGCTCTAGTG 107689 37 100.0 36 ..................................... TCGGGTGCCGGGGCGGGCCTTTGATCCACCGGAGGA 107616 37 91.9 0 ..................G..........G......A | C [107584] ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 98.6 36 CTTGAAGTGGTACATCCAATAAAACAAGGATTGAAAC # Left flank : CTTGAAACATACGGAATTTTACAGTTCTTTGATTTTTTCCTGCTGATATTAATCGGCCTTGAACTGATGGACACCATAAAGTCGTTCCTTGAGACAAAAAAGATAGAGGTCGGAATTGTTTTGATCCTTGCAATAATTGCAATATCAAGAAAGGTCATCGTTATCGACCCGAACACTACATCCGATTTTGAGCTTATAGGAATCGGTGCCTTAGTAATAGCTCTTACCGCAGGATATTATTTCGTCAAAAAAGCGGATGAAATCAAGACCAGCAATTAAAAAACAAAAAACATCACTGGAAAAGAGAATTATTCACACTTTTTTTTAGTTCTGATCTGCCGGTTTCATTTATTTATTAGTGAATACTATAATTAAGATTAAAAGGGCAGGCTGATTTCTTCTATTTATAAGGAGTCCGATAATTTTGCCAGAAGAAAACATAACGCAAATTTCAGGTGCCGAATTTCAGTTATATGAAAAAAGAACCAAAATTATCTGCG # Right flank : ATACTGATACACGGAAACACAGGCTGAACCGGGATTATGCTAAAATTTTGAAGTAAAAATAACAGTAATCAAAGAAAAAAGGGCTAAAAGCTTTATGGAGAAGATGAACATCCGGTCTGTTTATTTTAGAGACCTGTTTTTTTCAGTTATATCTTAAGGCAATAAATCCCGGAACAAATGGCATTAAAACCATTAAACTCTCCCGTAGATATCATCGAATCTTTCTATGTCATCTTCCCCGAGATACTCTCCTATCTGAACCTCAATTACCTCAAGAGGGATTTTTCCGCGGTTAGCAAGCCTGTGCCTGACACCTGCCGGGACATAAGTGCTCTGTCCCCTGACAAGCGTCCTGACATCCGAATCCACAGTAACCTCCGCACTTCCGCTTACAACAACCCAGTGTTCACTCCTGTGATAATGCATCTGAAGCGAAAGGACATTCCCGGGTTTTACAGAGACCCTTTTTATCTTGAAAAAGTCATGGGACTCAAGAACCG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAGTGGTACATCCAATAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: R [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 320269-319850 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMM010000001.1 Methanomicrobium sp. W14 Ga0466838_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 320268 37 100.0 36 ..................................... TTGAAATTTGCACATGGCTGAAACAGAGAGGATATT 320195 37 100.0 40 ..................................... TTCCTGATTATACTATCCGGAATAACAATCAGAACATAAA 320118 37 100.0 43 ..................................... ACGACTATATCCCTGTACGTTATGATCCCCGGAAAAATGAGTT 320038 37 100.0 36 ..................................... TGAATCAATCCGGGATGGAAAGGCTGCAATAGTGCC 319965 37 100.0 42 ..................................... TGGGAGCATAACGATACAAATACACACAACGGTTATTATGTA 319886 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 6 37 100.0 40 GTTGCAATCCTTGTTTTGTTGGAATACATTCTGCAAC # Left flank : AAAAATGCGGATTTAATATTTTTCCGGCTATGCAGTCAGAATTTTGCAGTTACACTTTATTGAAAAGCGTAACTAAAGTAAACATTTTAATCCTCTGCCGTGTCCTGAAAAAATATCAGAATTGTCGGTTATACGGTCAGAAAACAGTCTGTAAAAAGCATAGTCCCACAGCACAAGCTATGGTATAAAATCTGTTTTGATTTTTGAAGATATAAAGATTTTGGATAATACCATGCGGGCCATACAAAAGAACAGCAATTCAGTATTATAACCGAAACAGGAATACCTGCACGGCGCCAGGAGTCCGCTTCATAATTTTTCTGCACCCCATTCTCCTGACTGCATTATTCATAGAACCTTAGTTTAGTAGAATCTATCATACCACAGAAAATGAATAATTAAAGATGTAGCCCAGGGGATTTCAATTTTTATTTTCATTGGGATATATTCTATACTTATTTAACGTTCAGTCAGGCATTCAAGGCTAACGAGGCCAAGTT # Right flank : GGCATCAAATCTGTCCTGATCTGGCAAATACCTTTGCAGTTAAGAGATCAACTCAGACATATATAAAAGGCATGTTGGTTTTTCAGAACCGGGTATTTAAAGACATACTTTTCATATTTCAATATATCGTCTTTGAGAGATACAAAAAAACCGATTTATGAACCAGTCCATTGTATTTTTCTGTATTTCCTTTAGTAACCGGAAATATTTCACCAACTATTTCTTCGTCCAAATCTACCTGAGGGTTTTTGCGGCAATTACCCAATGATAAGGCAGTTTTTCTTTCTGTAATCGTCCTCGTTGAACCTCTTTCCGATAACGATCTTCTTCTCAAGGCAGGATTTACACATAGTAAATACAAGAATACTGTCTGATTTTCTTTCCTCATCCCTTTCCTTCATTCTGGATTTCAGTGTTTCTGCAAGTCTTTGCATTAATCCGTCCGTCGCCTCACCGAAAAACACACTTTTCTGAAAACGCTCAAGACCAAAATCCCTGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATCCTTGTTTTGTTGGAATACATTCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 393724-390008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMM010000002.1 Methanomicrobium sp. W14 Ga0466838_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 393723 37 100.0 39 ..................................... TCAATTTCACCTCCTTTTACAACTCATTTTCCAAATATG 393647 37 100.0 38 ..................................... TTTTTGGATAATTTCGTCCGCTTACATTCTGCATCTAA 393572 37 100.0 38 ..................................... AGAATTTTGCAGGTGCTCTGATGCGGGCATCCTTTGCA 393497 37 100.0 35 ..................................... TGGTGAGCTTCTCCAATGATTTCTGTTTCCGCCCG 393425 37 100.0 35 ..................................... AAGCCCCATATTGTTATAGCAAACATACAGATTAT 393353 37 100.0 39 ..................................... TCGAAACGCTTCCTACGGTTTCCGGGGGGTGGTTTCGAC 393277 37 100.0 36 ..................................... TACATACATCAAAACCTATATATTCTCAGGAACCTA 393204 37 100.0 36 ..................................... TTCAATCGAGGATAACAAATAGACAGCACGCCTAAA 393131 37 100.0 36 ..................................... AGGGTGGGTGGCACTGTATGTGATATCTTTTCTGTA 393058 37 100.0 36 ..................................... GGCCTGATAATGAAATTGCAATTGTTATAAGACCTG 392985 37 100.0 36 ..................................... ACACCTGTCCACCAACAGAAGTGAAAGCATGATAAA 392912 37 100.0 37 ..................................... AACGGTAAACTATGCAAAGCCGATGACAACGAATATA 392838 37 100.0 36 ..................................... AAGAAAAAGATTGCAGGAAAAGAGAAAAGGGACGTT 392765 37 100.0 36 ..................................... CAGAAAACTATTTCTGACGACGTTCTGACTCCTTCA 392692 37 100.0 38 ..................................... CAATTAAATCTTATTGTTGCGTTGCTTTCAGGTATATT 392617 37 100.0 36 ..................................... TGATTACGTCACAGCCTGCAATACCATAACCTGAGA 392544 37 100.0 36 ..................................... AAATAATTGTAACCTTCGTCAAGATAGATATCCGAA 392471 37 100.0 39 ..................................... AAACCACAAAAACAAAATATCTGAACTTATGGGTTCGCA 392395 37 100.0 22 ..................................... CATATGCAAACCTCCGTAATGC Deletion [392337] 392336 37 100.0 36 ..................................... TACATCTGGCCTTGTGTACTCTAATGTTTATTCTTC 392263 37 100.0 35 ..................................... CAGATGCAGACCTCTGTAATGCGTACCTCCGTAAT 392191 37 100.0 38 ..................................... TTGTGTTCATGTCGGTTATTCCGGTTATTGCATAAAAT 392116 37 100.0 38 ..................................... TGGATATGGGTACAGGCAAAACCCTAACAATACTTGAA 392041 37 100.0 37 ..................................... TCGATGATTCAACGGATCATAGTTATTCTAATTCGTC 391967 37 100.0 39 ..................................... TCAAATCTCTGTATCACGTGTTCTGTAATCTGTCCATTC 391891 37 100.0 38 ..................................... TGCGGGGGACAAGAGACCAAGCCGAAGCATTTGATCAA 391816 37 100.0 38 ..................................... TGTTTCTTCTTCGGCCTCTGTAACTTGGTTTTTGAATG 391741 37 100.0 39 ..................................... AGAGCCAGTTTCAGTTTTCCTAATGATGAAACAAACGTT 391665 37 100.0 38 ..................................... CACGTTGCCCCGGCTGCCATACCCGCAAATGGAATCTA 391590 37 100.0 38 ..................................... AAATGAGGATCAAGTAGTTCGCAGTTTGAAGGTAAAAT 391515 37 100.0 36 ..................................... CAGGATGCTGCTGATGCATGTTTTGTTTCTCGCACT 391442 37 100.0 35 ..................................... ATACTGAGACCGGAGCGATTGATTACGTCCCTTGT 391370 37 100.0 37 ..................................... TCAAAAATCATAGGTGTAGCAAATGAATGAAAATAGT 391296 37 100.0 36 ..................................... CAAAATCTGTTGCAACCTCTTCCCCAAACCTATCAT 391223 37 100.0 39 ..................................... CTGGTTGTCAAAACGTACCGTATCGGTTGGCATGCAGTG 391147 37 100.0 37 ..................................... TCTATGTATATGGTGATACATAGTTCGCAGAGGCCAC 391073 37 100.0 37 ..................................... GACTGCATTGACACCCGTAAAAGAGCCTTGAAACGCA 390999 37 100.0 37 ..................................... ATCAGACTCCTCGGACTGAGACGGAGCAGTAAACCGC 390925 37 100.0 36 ..................................... TACGGTTTTGAGAAAGCAAAAGGTCTAAATCATGCT 390852 37 100.0 39 ..................................... TCTGAATTTGTTTCTTTGTCTTCTAATGGTACATTGCAG 390776 37 100.0 36 ..................................... TTCTATCTCTTACAGCCTTTGCAATATACCAATTGA 390703 37 100.0 38 ..................................... CATTCAGCAAGTCTGAGGATTCTTTCTTTACCGGTTTT 390628 37 100.0 35 ..................................... TAACCAGGATTCTTGGATACTGCGTGCCACCTGTT 390556 37 100.0 36 ..................................... ATTGCTTATATCCACCTGAAAAAGTTTGCAGAAGAG 390483 37 100.0 36 ..................................... TTGGCCTGTGCTCTTGGAGTCCCGATCTCGACAAGC 390410 37 100.0 35 ..................................... GTAGTCCCAAAATTGATCAGCTCCTAGGTATACAG 390338 37 100.0 36 ..................................... CCGTTTGGTAATATCTCGTTAAGTGAAACCTGCACA 390265 37 100.0 38 ..................................... ATTTTATGGTTTCATTGTGCCAGTCAATTTCAGCAAGG 390190 37 100.0 35 ..................................... ATATTTTCAATACCAAAACGGATTGTACTTGTTTA 390118 37 97.3 37 .............................G....... TCACATTAGAAGCCCTCTTCAACTTCTATGATACGAC 390044 37 89.2 0 ...C.....T........G.................A | ========== ====== ====== ====== ===================================== ======================================= ================== 51 37 99.7 37 CTTGAAGAACTACATCCAATAAAACAAGGATTGAAAC # Left flank : ATATCAGGCAGAGTGACGTCGATAAAGTAAAGGCAGAGATTTCTGATATCCTAAATATTATCAGAACCGGATTTTACCCGAAGACAAAGAAAAATATCAACAAATGCACCGACTGCTGCTACAGAAACATCTGTACATGAAAAAATAAAAGAAAAACAGCAACCTGTTCGGCAAGCGGTATGAGCAGAATCTATGAAAATAACAGAACTGAATGCACAACAGTTATTAGTTTTCAGTTATTTGTTTTTGAATATTTAATTAATTTGAAAAGATTTCATTAAAAGCTTAGATATCAAAACATGATTAAATCTTGAGGGATAAGATATAGACAGATAAACCTCAGTTTAATTTATTAATCTGTAGGACTTATTTACTCGTGTAGCAGGAGTTACTTTTTCTTATATTTATAAAGGGTTTGATAATTTTGCCAGAAGAAAACACAACCATAATTTCGGGCAGAAATCACGGTTTATACGTAAAAAGAAGAAAAATTGCCTGCT # Right flank : TAACTGCCCAAATCCTTACTAAGGGTCTAAAAAACAGACAACTAATGATAGCCTTTTCTAAAACGAAACACAACATATAACCTGCAATTAATGACGAAATTTAAATCGAAATCAATACTGCAGTCAAAAAATATTCAAACAACAAATATCAGCCTGGATTTCATGCTGCGGGCATTTTATATGGTCACGGGCCTTTTTCTTACAGCCGCAGGAATCGCACTGTCGACAAAAGCGGACCTCGGAACGTCTCCGGTATCTTGCATACCCTACGTATTAAGCCTCGGCCTTCCTCTGACAATAGGAGAATGGACGTTTATTATGAACTCGGCGTTCATTTTCTTCCAGTACTTAATACTAAGGGATAAGTTCCCGCCTTACCAGCTGGCACAGGTATTAATAACCTTCGTATTCAGTGCATTCATCGATTTGAACATGATGCTAATGTCGGACATGCTTATATCAGGCTACCTGCCACAGTGGATATTCTGCCTTTTAAGCTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAGAACTACATCCAATAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 406249-404521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMM010000002.1 Methanomicrobium sp. W14 Ga0466838_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 406248 37 100.0 36 ..................................... GGTTGGAACTTGTTTTGCTTCTTTGGATTCGATTCA 406175 37 100.0 37 ..................................... TGTTTCGTCTTCGGCCTCTGTAACTTGGTTTTTGAAT 406101 37 100.0 38 ..................................... TCACAGGTATAAAATGGAAACTTGAAATTTAGATTCGG 406026 37 100.0 35 ..................................... TTAAAATGGGAATAGCTGATATAGCCGGACTTGGA 405954 37 100.0 37 ..................................... CCATACACAAAATTCGGATCAGAAAAATTGTAATCTC 405880 37 100.0 36 ..................................... TTCTGTTTTTCGTAAGTATTTTCCTTCAGACCTTAT 405807 37 100.0 39 ..................................... TATGCCTGGTGAAAAGTCACCGGTTGGATAGAAAATGGC 405731 37 100.0 35 ..................................... AGAGAGAGGCCGGTATAGAAGAACCAAAGAAGAAA 405659 37 100.0 35 ..................................... TCGTTTGCTTTTGTTTGATATCCAATCACCATTGC 405587 37 100.0 34 ..................................... TTAATTTATTATATCTTTTATAATTTTCATCAGA 405516 37 100.0 39 ..................................... ATGTTGTAAGTTCTGCGTCTGTTGATTGTAAGTTCTGCG 405440 37 100.0 38 ..................................... TGAAATCGGGCGAATACTTCGCCGAATTGTTAAAACAA 405365 37 100.0 37 ..................................... TCGATCTTAATTGTGCTGCTCATGGCTCACCTTACGA 405291 37 100.0 37 ..................................... AATATCATTTGAATATTGACACTACAAACCTTATTGA 405217 37 100.0 35 ..................................... GGGGGGATTGAGCACTTTGCGGAGCGATTGGGGGA 405145 37 100.0 39 ..................................... TAGACTTCGTGGTGAACCTGCTTCCGCTCTCAATCACGA 405069 37 100.0 35 ..................................... TAACATCTCTGGTATTCATGGGTTACGGGTATTAT 404997 37 100.0 38 ..................................... TGTCTTTGATTACCTGCAGGAAATGCGGTGCTAATGTC 404922 37 100.0 38 ..................................... CCTGTAGTGGTTCGGTACATTCAGAGACTTATTATATT 404847 37 100.0 38 ..................................... TTTGAATTATAAATTGCAACTGTAGTTTGATATTTTCC 404772 37 100.0 34 ..................................... TGGTTCATATGAAGATATAAGAATAAGTATTGAA 404701 37 100.0 35 ..................................... GTGTATTCCCGGCCTGACGGGCTTTCTATGATATA 404629 37 100.0 35 ..................................... GGGGGAACATCACAAAGAAGACAGGTAATAGCGAC 404557 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 24 37 100.0 37 CTTGAAGAACTACATCCAGTAAAATAAGGATTGAAAC # Left flank : TTTTGACAAAATACTGGCTCTTTCAACGGAAGGGTGCAGAATATGCAAATCATGCAATTATCCTGATGAACCGTGCAGATTTCCGGACAGGATGCAGCCTTCAGCAGAGGGTTACGGGATTTCAATAACAAAACTGGCCAAAACCTGCGGCATAAAATACTATAACGGACCTGATACCGTAACTTATTTCAGCATAATCTTTTTTTAACGCTTTTTTTAGTTTTTGCGGGTTTTTTACCAAACCTGCTTTGCCGGGTTATTCCGGCCGGAATAGTCTTTTCTTCAGTTTTTTCAGAGAGGAAAAGGCAGGAGAGTGTGATTTTTGACTTTGACTTCAAAGGTTTGATTTATTAGCATTGACTACATATTTATGTCCTGAAGGAAAGGTTCTTTTTTTCTTCTATTTATAAAGGGTATGATAATTTTGCCAGAAGAAAACATAACCAAAATTTCAGGCTCAAATCACTATTTATACGTAAAAAGAAGAAAAATTGTCTGCT # Right flank : ATGAAAATAGTCCTTGTGTAATCCTATTCTGTCGAGTGTATAGAAGGCGTAACTATGGTCCAGGAATAACTATGCGGTGTACCTGTTTAAGACCCGGCAGGCAAATATCACTTGTCGCCAAAAACCAGTAATAAAGTATTAGCCGCAATAAAAAATGACCGATGAACCTTAAAAGGCAACACGGCAGATTTTTAATATCGACGTTTTGTTTCCGCATCGTTAAGCAGGAAGCTTCTATAAAGAAGAGAGCAGGGTACAATTTAACTATACAAAAGTGACAAAACCAATATCTAAAGATTAGGAGTAACCACAATGGAGTACGTTAAAAGCCAAAAATACAAAACCCCCGAAATACTGGCTAAAATCATGGGGCCTAACCCGTTCAAACTGCAGGAAGAAATGCTTTTAAATCATAAAATTCCTGCCGGAAGCCTCGTCTGTGACCTCGGGAGCGGGCAAGGGCTTACAAGCGTTATGCTGGTAAAAGATTATGGCTTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAGAACTACATCCAGTAAAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 89142-86907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMM010000003.1 Methanomicrobium sp. W14 Ga0466838_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 89141 37 100.0 37 ..................................... TACAAGCGGCAAGGAAGATTCTTGAAAGAGAAAAAAT 89067 37 100.0 37 ..................................... GGCATAGGCATGTTTGTCTTTTTCATGATCTTTTCTT 88993 37 100.0 37 ..................................... ATACTATTGCAATTACTAAAAAAGCTTTTGAATCAGG 88919 37 100.0 37 ..................................... ACCGAGGCAGCTATAAGAAGAGCAGCACAAAAAAGAT 88845 37 100.0 38 ..................................... TCCATATTTGAGGACAAAGAACAATACGCAACTACTAT 88770 37 100.0 36 ..................................... ATGACTGGTGCAGATATCATATGAAAACCGCCGTCC 88697 37 100.0 38 ..................................... TTTCGTGGAGCAAAGCGTATGAAATCTATGGTATTGAC 88622 37 100.0 37 ..................................... GAAGGTTTAAATGCGCTTGCGTCATTTGGATGTATAG 88548 37 100.0 37 ..................................... TCATGCCCGATCCGGCGAATGCTACATACGAGTATGT 88474 37 100.0 34 ..................................... ATTCTATGCTTCTCTTGAATTCTCTTATGTTTGT 88403 37 100.0 38 ..................................... TAATCTTCTTTCATTTTAATTCTCCTTTATATCTATTA 88328 37 100.0 36 ..................................... TGCGTTGCTCTTGAAGGCTTTTCAGAGATGAATTTC 88255 37 100.0 36 ..................................... TTCTTATCCATAAATAATAATTCCTGTTCATTGCAA 88182 37 100.0 34 ..................................... TCGATTCCGACGATATGCATAATCTCTCTTCTGG 88111 37 100.0 35 ..................................... GTCAACGCGAGTATAAACATATATCTTTGGAGAAT 88039 37 100.0 36 ..................................... CCCGTCCGGAAACATTCATATTTAATTCGCGTGGGC 87966 37 100.0 38 ..................................... TAGAGATAAATCTAGACGACCAGAGCATTTCAGGAAAA 87891 37 100.0 35 ..................................... TTCTTTCTTCAAGTTCGTTTAGTTTCTTCCATACT 87819 37 100.0 37 ..................................... ACTGCGATTCCCGCAAGTTTGCAAACCTCGACACTTT 87745 37 100.0 37 ..................................... TTAGCTGTTTCATTGTTACGGCTGTATTTGCTGATAA 87671 37 100.0 35 ..................................... ATATACACCACTATGGTGTATCTAAAGAAGGTGAA 87599 37 100.0 35 ..................................... TACAGCGCATAGAGATCGCTCTGTATCACGCTTTC 87527 37 100.0 37 ..................................... CTGCTTCATCTGCCTCTTCTTTTGCCTTACTGATATC 87453 37 100.0 35 ..................................... TTGGAACTCGTAGCACGAGAGGGGGCCGGGCGGAA 87381 37 100.0 36 ..................................... GAAACAAAATCAATTATCTGTGGGTCAGATGACGGT 87308 37 100.0 37 ..................................... ACGGTTTGTCCTGGGACTACAAAGGCACTTACCCGAC 87234 37 100.0 35 ..................................... TAGACAAGTTCTGCAGCCTCAGCAGGAGCCGCAGG 87162 37 100.0 35 ..................................... TAGAGCGAGCGTAATTTAGTATTATGGTGAACCAG 87090 37 100.0 37 ..................................... TAATTTCTTTCCCGGTTTTCATTTCCGCAACTGCATT 87016 37 100.0 36 ..................................... CGAACAGTAAAAACTCTTTGGTGAAGGTTAAGCCTA 86943 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ====================================== ================== 31 37 99.9 36 CTTGAAGAGTTACATCCAATAAAACAAGGATTGAAAC # Left flank : CTGAACGGCGACTGCGATGCAGCTTTTGTATCTTACCAGTCCGCAAAGGTCTATGGCCTTGATTTTTCTCCGGTGTCCTATGCAAGGTATGAGTTTGCAGTACGCGACTCCGGGCTTTCTGATGAAAGAATAAAAAAGCTTGTTGAAGCCGTTTCATCGGATGAGTTTAAAAGTGCACTTAAAAATTCCGGCGGCTATGATGTATCGGTATCAGGAAAAATGAGGTCTGTATAATGTGTATATGAACGACTGTCTGTAAAATACCCGGATTCATTAAATATATCTTTTTCCTCTTTTATTGCATATTTTTTTTTGCAGCCGTCTATTTTTCAATTGTCTATTTTCAGTTTGGTTTATTTATCTGTAAGATCTATTTACTCATATAGAAGGAGTTTTTCTTATATTTATAAAGGGTTTGATAATTTTGCCAGAAGAAAACACAACCATAATTTCGGGCAAGAATCAGAGTTTATACGTTAAAATAAGGAAAATTGCCTGCT # Right flank : TCATGATGATAACTCCTTTGCCCTTTTTTTATTCCTGCCCTTGTGAATTTTTTTCATGACAGATTTCAATTTTCAGTATTTCCAATTCTTTTTCCATAATTTTTATAATACTGTTGCAATTCTGCAACAGAGAGAAGGGTTAAAAAATGAGTGAGTGATCACTCATTTATACTATGAAATACGAGATTATTTTATGTTCCTGTTGTGGGGAGGTTTGTTTTGAGCAAAAGATTGTCTGAAAAAAAATATGAAGACCTGATGAGAGCTGCGGTTGAACTTTTTTCCAGACAGGGTTTTCATGCTACTCCTGCGCAGCAGATTTCAGACCTTGCAGGTGTATCAGTAGGAACGTTGTTCAAATATTTCGGGACCAAGGAGAATCTGATTGACACTTTATACTTCTCTATTCACCAGACATTGTCAGAAGTTGTAGAAGAGGCAGTTAGTTCAGCAGATTCCGTTGAAGAGAAGATAAAAAACGCCAAACGGCAGGTATTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAGAGTTACATCCAATAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //