Array 1 429142-430388 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSE01000002.1 Salmonella enterica subsp. enterica serovar Newport strain 62 NODE_2_length_690912_cov_24.306, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429142 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 429203 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 429264 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 429325 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 429386 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 429447 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 429508 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 429569 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 429630 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 429691 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 429752 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 429813 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 429874 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 429935 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 429996 29 96.6 32 ........T.................... GTAGTGCAACGCCGGTGATTTTACCAGTATCA 430057 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 430118 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 430179 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 430240 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 430301 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 430361 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 447054-448852 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSE01000002.1 Salmonella enterica subsp. enterica serovar Newport strain 62 NODE_2_length_690912_cov_24.306, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 447054 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 447115 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 447176 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 447237 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 447298 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 447359 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 447420 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 447481 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 447542 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 447603 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 447664 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 447725 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 447786 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 447847 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 447908 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 447969 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 448030 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 448091 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 448152 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 448213 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 448274 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 448335 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 448396 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 448457 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 448518 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 448579 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 448640 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 448701 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 448762 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 448823 29 100.0 0 ............................. | A [448850] ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //