Array 1 533451-536526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072372.1 Prevotella denticola strain F0288 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 533451 37 100.0 35 ..................................... AATCTTAGAATAAGGGTCAGACTTAGCATGAAAAA 533523 37 100.0 34 ..................................... CTACAATGAAATTCCCAATGACTACATATCAGAG 533594 37 100.0 34 ..................................... TTGGCGGTTTCATTTATTACTCTTATTACTCTGA 533665 37 100.0 34 ..................................... TTGGCGGTTTCATTTATTACTCTTATTACTCTGA 533736 37 100.0 38 ..................................... AGTGGAGCGCGTGAATGAGAAAACGTTTTTCTCCGATG 533811 37 100.0 35 ..................................... AGAAAAACGATATTCTTATCGCTCTTAAATACGGA 533883 37 100.0 35 ..................................... TTAGACAGCTTGTGCGTAATGCTGTGATGCCTTCG 533955 37 100.0 35 ..................................... TTCCAAGAGGCAGTTGACTTCGCAGAGAAAAACAA 534027 37 100.0 36 ..................................... TTCTTCAAGGGTGATGAGAAAGAATTTGAAGAGATT 534100 37 100.0 36 ..................................... AGTACTTTTACCTGGGGTAGAAGTAAAAGGAATTGT 534173 37 100.0 37 ..................................... AACTATAATAACTATAATTATGAAATATTTACTTAGA 534247 37 100.0 37 ..................................... GTGGCGATAAGAATGTCTAAGAGAGCGTATGCCCTTT 534321 37 100.0 36 ..................................... GGATCAAAACTCTAAGGAATTCAAGGAGGCTCTGAA 534394 37 100.0 35 ..................................... AGCCAAAGGAGTCTGCTTTGGTTGTGGCAAATAAG 534466 37 100.0 36 ..................................... GGACTGCACTGACAAAGAAAAAAAATCTTTAAGAAA 534539 37 100.0 35 ..................................... TACAGGCGAAAGTTTCGCTGCTTGCTTAAAGCGTG 534611 37 100.0 35 ..................................... GTAACAATCTGCACGGCAAACGAACTCAACAAATC 534683 37 100.0 36 ..................................... ACTTAACAGAACTTACAGCAAGTAAACAATGTGCGG 534756 37 100.0 38 ..................................... GATACAACACCCCTGTCTACATGACCTTTAAGCAAGCC 534831 37 100.0 33 ..................................... AAGGAAGTCTTCATCAAGCGAGGCCAGGAAGGT 534901 37 100.0 35 ..................................... AAGACTTAAAAAAAACATATAAAGAGTGTAGTGAT 534973 37 100.0 36 ..................................... TAAAGTCATGAATCTACAAGACTTAAAAAAAACATA 535046 37 100.0 35 ..................................... TACACTACTTGCGAAAAGTACACGCATGACATAGA 535118 37 100.0 36 ..................................... CTTTCGTTTAGAATAAATGAAGCGTGGTGTCTCGTC 535191 37 100.0 36 ..................................... GAAAGTTAAGGGAGTTGATAACAACGGAAATAAACT 535264 37 100.0 37 ..................................... CACTATTATGTAAGCGACACAGCGGGGAGTTTTGCAA 535338 37 100.0 36 ..................................... AGATTGCAATTATATGGGAAGTTTGATTAGAGGCTC 535411 37 100.0 36 ..................................... TTACAAACTGCTTTAGGGACAAAAAAAGCAAGCATT 535484 37 100.0 34 ..................................... ATTTTACCAATTACAGAGCAGAATAAATTCTCTT 535555 37 100.0 37 ..................................... TTCGGTAACCAAAAATTGCAATTATATGGGAAATCTT 535629 37 100.0 33 ..................................... TCCATCTTTGACTTATTGCAACAATATATATTT 535699 37 100.0 33 ..................................... TCCGACATCCACTCGTTGATGAGTGTCGGGGTG 535769 37 100.0 34 ..................................... TTTGGCTTTTTGCGACAACAAGGAGACACGCGCG 535840 37 100.0 37 ..................................... TATTTAAGCCTTTCCCGATATGTTAGGCAAAAACAGC 535914 37 100.0 37 ..................................... CCAGAACTATGATAGCATGGACGAGTTATTCGCTGCA 535988 37 100.0 38 ..................................... TTATTTGTCACGACATTATTTTGGTGTGGGCATTTCCA 536063 37 100.0 34 ..................................... GGCGGTACGCTTACTTTTACAAAGTTAATTATGA 536134 37 100.0 36 ..................................... TACTTTTACAAAGTTAATTATGAGAGTAAAACAAGG 536207 37 100.0 31 ..................................... CCGAAATTAATATAACCCTTTAAGCCCTCGA 536275 37 100.0 35 ..................................... GATCCAAAAAACCTAATAAGGTTGAGAATCAGGAT 536347 37 100.0 34 ..................................... AATAAAAAAAAGTTCGGGTCGAAGATCCAAAAAC 536418 37 100.0 35 ..................................... TGCAGAGCTTAACAACGACGGCGAAACCGTCGTTA 536490 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 43 37 100.0 35 GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Left flank : TTCTCCGAGATAGTCTGCCCCGCAGCCGGCATCACATCATAGAAAAAGCCGTTCTCCACTGCCGGACCGAAGCCGAACTGAATGCCCGGATAGAGTTCCTGCAATGCCTCGGCAAGCAGATGGGCAGAGGTGTGCCAGAAAGTGTGCTTGCCTTCTTCGTCATCGAACTTGTAAAGTGCGATGGTCGCATCTCCGTTGATGGGACGGTTCAGTTCTGTCGTTACGCCATTGACACCGCAAGATACAACGTCACGGGCGAGAGCCGGCGAAATACTCTCGGCGATTTGATAACCAGTCACACCCTGTTCGTATTCACGAACGGAGCCGTCTGGGAAAGTGATTTTAACCATACTACAAATTAGTTTTATAAATCAAATGTTGTGGCAAAGGTACTACTTTTAATTTATAAATCATAATTCTTTTGCCCCAAAAGGCTCTTCTTCCGAATCCTTGTTCTAATATTGAGTGAAGGTTGAGGACGCAAAGCGAATTCTTGCAAA # Right flank : GAGTAAAGACTTGTATTCCTTTATATGCCGCAGCCCCATGCGTGTAAGACCTAAAAATGCTTGAGGAATTAAGAGAAATTAACCATATTCCAAGCGAGTGCAAAGGTACGAAAAACTGTGCAGAATGTCAAAGATCGATGCGTTAAATATTCTTTATGGAGGAAGCATTGCTGCCGCTTTCCCACATGGGGAGGACATTCTTCCCTGTTGTAGAAGGTATCCTCGCTGCCATCTTCAGAAGAACAATGTGTTGCGCGAACGGATGATGACATCTATGCTGATGTCTTCACCGATGATCTGCATTGCCCGGATCTGATCGGTGGAGACAGGACAGACGATGATGCTGTCGTGGTTGTCGTAAAGCGACTGCACCTCGGCAAGGTCGCTTTTAATTTCATCGTAGACGCTCTTGTCGAGGTCGGCAAGGAAGATGGAACGCTGGATGCGTGTGCATCCTTTCCGTTCCAGGTATTTTGCGATATGATAGCGTACCTTGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 639507-641399 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072372.1 Prevotella denticola strain F0288 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 639507 47 100.0 30 ............................................... TAAGGGAACAATCATTGGAATGAATATACC 639584 47 100.0 30 ............................................... GGAAAGTCTTTTTGAACCAACCTACAATAT 639661 47 100.0 31 ............................................... ACTTGAGCGTTTCAAAGAGTTTGTTGATGAA 639739 47 100.0 30 ............................................... AATAGGGCTGACAACAATCTTCTCCTTACC 639816 47 100.0 30 ............................................... TACACGCAATGTGTACACGGATGACCATTT 639893 47 100.0 30 ............................................... AATGGAGAAAATACCCTACCTACCACCTCA 639970 47 100.0 30 ............................................... TCTGCTCGCTTGCTTCTTGGTATTCTCGTC 640047 47 100.0 30 ............................................... GAAATATCATCGTATAATTGCACTTTGTGC 640124 47 100.0 30 ............................................... GATAGCTTGAAGTTAACTGCTACAAAGTGG 640201 47 100.0 30 ............................................... ATTAGTAGGTCCTGATATGATAGCTATGAC 640278 47 100.0 30 ............................................... AGAAGAAGCACGCAAAAGAACGTCACCTTT 640355 47 100.0 29 ............................................... TATGTTTGTAAGGATTTGTCATATTATTC 640431 47 100.0 30 ............................................... AGCATAGCTACACGAGGACCGAACTTCTCA 640508 47 100.0 30 ............................................... AAATCATCTACCAAAATGAGTACCGAGAGC 640585 47 100.0 30 ............................................... TGTCCTTACCGTAGGTAGAGCGAACATTCT 640662 47 100.0 30 ............................................... ATGGCAATCTGTGTTTTACCTGAAGACATC 640739 47 100.0 30 ............................................... CGGCTACCTGTGTCATTCCATTGCCGTTTT 640816 47 100.0 30 ............................................... CACGGAGGGCACGCAGGCGGCGGCATCGTG 640893 47 100.0 30 ............................................... CGCCCTGCCTCCTGCACCTTTTTGAGTTGC 640970 47 100.0 29 ............................................... GATGGCTCGATGAGGTACTTCAGTGGTAT 641046 47 100.0 30 ............................................... AAATAAGCAAGTATATAGTTAATGACATGC 641123 47 100.0 29 ............................................... CATCTGCATTTCATACTCGAATCCGTTGC 641199 47 100.0 30 ............................................... ATGACCGGCGACGCACCCTGCGCTCCTTCC 641276 47 100.0 30 ............................................... GCCCCTTATCTCGTTCCTTCCGACATCTAT 641353 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 25 47 100.0 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : CAGTGTCTTGCTGTATAGGATAGTGACTGGATTGAACCGGCCTTTCCTGCAGATGTGCTGATGCCAGGCACTTATGGAGTTGCCGACAGACACCGGGCGTGTTGATGGCCCGTACCATGCAATATATTGCCGGGAGGGGAGCCAACTTGCAGCTGGCGAAGAGCTGTGCCGGCAGAACTTATTTCATCAGGAGATTACTTTTCCGAAGACAATGCGGAATGGTCTGTTCAAAAGAGATTGCACAGGGGGATCATGCTGTTTGAGTTTTATCGGACAGCATTCAATAAACATAAGTGCAGGAAACGGAGATAATTTATGGATTCGGCAAACGGTCATCCCTTCGCAGCAAGCCTATACGCTCTACGCAGCAGCCAACTACACATTCCTGAAAGCCAACTACGCCATTCAACTGAAAGCCAGGAATAAATCTGTAAGGCAGCAGGCAAGACTGACCAAAAGTCAAAACACGAGTTTAAGCTTACAAAGTCGTCCGTTTGGTG # Right flank : TTGGAAAATAAGTATTGCTCTGATTCTCAGTTAGTAACATTGTCTTTGTGCAAAATAAAAACTGCAATCTAAAAGAGTCCTATTGGTAATGATAGGACTCTTTTTCTTTTAGAATAATTCAAGTTGCTGCCCAGGAGCGTTGGGTGTTTGTGCCTGTGCCCCACAAAAAAGCTCTATCTCACCAAACTGTTTGTCTGTAATAACCATAATGCAAACATTGCCAGAATTAGGCATAAAAGACTTTACTCGCTTCACATGTACATCCGCATTCTCTCTGCTTGCACAATGACGAACATAGATTGATAATTGAAACATAGTAAATCCATCTTTCATCAAATCTTTCCGGAAAATAGTATAAGCACGCTTTTCCTTGTTTGTATTAGTTGGAAGATCAAAAAAGACCATCACCCACATAACCCTATATTCGCTAAGTCGTTGCATCAAAGAAAAGAAGGATAAGAGATTTCACGAGCTTCCCCATTATAGCACTTCGCAAGACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //