Array 1 218542-221282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVUS010000009.1 Bradyrhizobium sp. dw_78 9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 218542 36 100.0 30 .................................... CCTCTCCAAGATGACGTGGCTGCCGCCTTC 218608 36 100.0 30 .................................... ACAATTCGAAGTACGGCGGGTAGTCGTCAA 218674 36 100.0 30 .................................... CAGCTCGAGGCCATTGACGACGCTACAGGC 218740 36 100.0 30 .................................... ATTTTGCTGGATTGTTCGCTATGGCAGATG 218806 36 100.0 30 .................................... TCAAACACCCCCTGCGATGTAAATCAGAAT 218872 36 100.0 30 .................................... CGCTCTCGGCGCCGCATCGAAGTTGAAATC 218938 36 100.0 30 .................................... GCGCCGAGGTGGTGTTATTGCCGATGTTGC 219004 36 100.0 30 .................................... ATATCGAAACCCTCGCCACGCAGGCGGATA 219070 36 100.0 30 .................................... CGATCGTCGCCGCTCGCACGTCCTCTGCGG 219136 36 100.0 30 .................................... CGGCCGTTCCCATGGTTCTCGTTGTACAAT 219202 36 100.0 30 .................................... CTTCAGGCCCGGGATATATTGCGGAAGCGG 219268 36 100.0 30 .................................... CGGTGGCGGTGATGAACCTCGGGATTTCCT 219334 36 100.0 30 .................................... CGCGTCTTGCCGTGCTGCGGCGGCGCTTCG 219400 36 100.0 30 .................................... CAGATGGGGCCCCAAGCAAGCGCGACACTG 219466 36 100.0 30 .................................... CATGAGGCCAGCGACTGCGTCAAGATGATG 219532 36 100.0 30 .................................... TTTCGCGCGGGCCGACAATTGAGTAACTGT 219598 36 100.0 30 .................................... ACGCCGCGTGCTTCTATACTTCTATAAAAG 219664 36 100.0 31 .................................... ACGCAACTAACGTAAACGATGAAAAGCCAGA 219731 36 100.0 30 .................................... CGATCATCCTCGCTCACCACAAGATCAAGC 219797 36 100.0 30 .................................... TCCCTCTCCCGCAACCCGCTTGAAGTCGCC 219863 36 100.0 30 .................................... AAGGAGGGCAGCGGGGATAAGCCGCTATCT 219929 36 100.0 30 .................................... CTTTCAGAAAGGCTCCAATTACACACGGGA 219995 36 100.0 30 .................................... GCAATCACTATCCGACCGCGGCCGATGCCC 220061 36 100.0 30 .................................... TCGATCGTTACCGGTCAGTTTCGTTCTACG 220127 36 100.0 30 .................................... CGCGGCGCAAGAGGCGAAATTCCGAGCGGC 220193 36 100.0 30 .................................... AGTACAGCGCGATGGCGGCCTATGGCGCTT 220259 36 100.0 30 .................................... CCGGAGAAACCATGAGCTATCATTGTCCAG 220325 36 100.0 30 .................................... TAAGAACGATAGCCCCTGTCTTGATGTTGA 220391 36 100.0 30 .................................... TCAATCGTTACTGGGCAGTTTCGTTCTACG 220457 36 100.0 30 .................................... TGCGCTGCGCCTCGACCAAATGTTTCGGAA 220523 36 100.0 30 .................................... ACCTGCTGCAAGGCATCGCCCTGGCTGATA 220589 36 97.2 29 .......T............................ CAGCGCCACGGCGGCGGCGTTCTTGCCGT 220654 36 100.0 30 .................................... TGTACGACCGTCGCGGCGTCGTTATCGGTG 220720 36 100.0 30 .................................... GCGGGCGCAACCGTTATCGCCGTCACAACG 220786 36 100.0 30 .................................... CATGGCACGCGGCTGCCCTCTACGCGAGTA 220852 36 100.0 30 .................................... CAAAGGTCCTGTCAAGAACCTCATATTTCT 220918 36 100.0 29 .................................... AGGTCGGCCAGCGTGGACCCGTGTTCGGT 220983 36 100.0 30 .................................... GGCGCGCGACGGCTGGACGCCCGAGGATGT 221049 36 100.0 30 .................................... GGTGTGGTCGAACGAACATCGCGCTTGGTG 221115 36 100.0 30 .................................... CGCGTAAAACTGCTTGAGGTCGGTCCGGCC 221181 36 100.0 30 .................................... GAACGGCTCGGTCTAGCTCGCGACGCAGGG 221247 36 97.2 0 ...........................G........ | ========== ====== ====== ====== ==================================== =============================== ================== 42 36 99.9 30 AGAATAGCGCTTCAGAGATCGCGGTCCAGCGGCAAC # Left flank : CATTGTTTCGATACCGGAAAAATATCAGATATTGTACTTCCACGTCCTCCTTCGCCAATTGAACTGGCCGGCCTGGAAACACTGATCGCGTGACCGTCACCCAGCTCAACGGTTATCGTCTGATGTGGATTTTTGTCATGTTTGATTTGCCGGTCACAACGAAAGCCCAAAGTCGGGCAGCCACCAAGTTTCGCGAATTCCTGCTTGATGAAGGTTTTGAGAAAAGCCAGTTTTCAGTCTACGCTCGCTTCTGCAACGGCAAGGAGCAATTCGAGACCTACCTGCGACGGGTCGAGGGCCACCTGCCCGATCGTGGCGACGTTCACATCCTGACTTTCACGGATAAACAATATGAAAATATCGTTCGATTCTCGGGTCAACGGCGCAGGAAGCAAAAGAAAAACCCCGACCAGCTTGCTCTCTTTTGAGATCTTCAGCGGTTTCTTGCGATGGGGAAAAACAGGTATCCCGTTTGTTTTCAACGAGATACCTGCTTATCG # Right flank : CGTAGCAGGAGGGGATATTTACCGTGCTGCAGAATAGCGCTTCAGCTCGTAGCTCGTAGAGCTAGTCAGCGAAAGCGTAACCCGCCCTCACGGCACGACTCGATGAGGGGATGTAGTGGATTACGCCTCCGGCTAATCCACTCCACGGGCTTCCCCAACGAGACGATTTAGCTGCATCATGATGGAACGCTAGCTGAGGACGAACGTTGGCTATGCTGAAAGCAGGCCCATCATGCTCGTCTTCGTAGAAAAGATTCCGCCGCCGCTTCGTCCCCAGATATTCAACGATTACGCGGAGCAGGATGCCGCGCTCGCGGCGCGTGAACGCCAGGCAGACTGGGTTGGCCGCGCTGTGGATACGCTTGCGCAGGCCTGGAAAGGCTGGACGTCCAAACGTAGATAACTCCAGCGGCCCCTCCGAAGCGGTCCCGCCGCGATCATCAAGCGCGCCGAATGCGTCCGTTCATCGCCTGTCACCGCCCTGGCCTATCCAGCGGCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATAGCGCTTCAGAGATCGCGGTCCAGCGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-3.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //