Array 1 15985-17142 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYVV01000015.1 Lactobacillus jensenii strain UMB4685 NODE_15_length_44710_cov_25.552587, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15985 36 100.0 30 .................................... AAGAGGAGTTGCTCTGTCTTCAACTTCTTT 16051 36 100.0 30 .................................... TAATGGTCATACTTTTTACAGACTTGATTC 16117 36 100.0 30 .................................... CAAAGAAGAGGGGGCTGGGACAATTCCATT 16183 36 100.0 30 .................................... TCGTGAGGACGCAATGGTAACTATAAACGG 16249 36 100.0 30 .................................... TAAAGGGCAGCCATTAGCAGTCAAGCTAAT 16315 36 100.0 30 .................................... CAGAACCAAAATCAGAAGAACAAGCTTAGG 16381 36 100.0 30 .................................... GTGAAGCTGCAGACTTTGCCGGACGGCGCA 16447 36 100.0 30 .................................... TTCCAATGGTGAAACAAGAGTTATCAAATA 16513 36 100.0 30 .................................... TGTTGCAAGCGCCGACCCTTATGGTGGTAT 16579 36 100.0 30 .................................... AGTAGCTCAACAACTTCAAAGCGAAGTGGG 16645 36 100.0 30 .................................... TTTTTGAGCTGTTTTATCGAGCCAAGAAGG 16711 36 100.0 30 .................................... GGATACTGGCAGGCCTTCCATTTATCAGTT 16777 36 100.0 30 .................................... TGTTTAAAGTAGTAAACAAGACTATTGAGC 16843 36 100.0 30 .................................... CTCTATTTTAATCTGCATACATACATGTAA 16909 36 100.0 30 .................................... AATATATCAAGCCTGAAGCATTAGATGGCT 16975 36 100.0 30 .................................... CTAAAGCTTTTTCAGCATCATTTTTAGTGT 17041 36 100.0 30 .................................... ACTACTTTCAATTTCTCTGTCAAGCTTCTT 17107 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : CACAGGATTATCTTAATTCTTATCAGAATAAGATTATTTCAAATCTGTTTGATACTTTAAATGAAAATCAGAGAAATAAAATATTTAATACGTGGCGTCAGCTGAGTACTGATATTCAAGATATAATATTTATGACTGATTTACCAATTGAAGTTGGTGAAAATCTAGATTTAAAGAAGCTATTCAAATTTGATGGAATTCATTTTGATGATTCTGTATTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAACGTAAGTCATTATCTTACAAAAGAACAATTGAATAACTTAATTACCTTTATAAACGAAGTAAATATGCCTTTGATATTAATAGAATTTTCATCTTCAGATTTTAAGGTTGTTAGTGGGGATGCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTTAAATCTGAGAAGCTGATGATAAAATGTCG # Right flank : AGTAACAAAAACCAATTTAATTAATATGATCATATTTTAATTTGAGGAGAAAACTAAGTATGTGGACATTTCTTAAATTTTTTCAGACACCAGTAGGCTATTTAATTGGAATGGCTATTCTTGTCATATTGCAATACGTGTATGAATGGATAAGAGACGAGCGCTAAAATATTGTTTGGTTTATTGGCAATTAATATACTTTAGAAAGCTGCAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGCATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATACGATTTTTAAAAGTTACTGAGGGGGCATAATATGGATGCAATTATTGATTTCTTTACTAACCCTATATGGATTACATTTATAACAATTTTATATTTTTCTATGGAGTTTATAGAAAATAAGCGAAAAAAATAGCGCTTTTTTATTGGTAAAGTAATAACAATTATGTCAGTTTTAAAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //