Array 1 32-1219 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQV01000018.1 Escherichia coli 606 contig0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 93 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 154 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 215 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 276 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 337 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 398 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 459 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 520 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 581 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 642 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 703 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 764 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 825 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 886 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 947 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 1008 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 1069 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 1130 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1191 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCCCAACGCTGAATATTGCTGGCATAGCCG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19298-20118 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQV01000018.1 Escherichia coli 606 contig0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19298 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 19359 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 19420 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 19481 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 19542 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 19603 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 19664 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 19725 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 19786 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 19846 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 19907 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 19968 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 20029 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 20090 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //