Array 1 7007-6258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUKR01000045.1 Pseudomonas aeruginosa strain 991.rep2_PAER 116_7146_145275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7006 28 100.0 32 ............................ TCGATCAAGCGTTCGCGGATGGCCAGCGCCTG 6946 28 100.0 32 ............................ CTGGTGGACAGCAACGAGCCACACAACCTGAG 6886 28 100.0 32 ............................ TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 6826 28 100.0 32 ............................ ACGATGATCTATCAGACCTATCGTGGCTACGC 6766 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 6706 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 6645 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 6585 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 6525 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 6465 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 6405 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 6345 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 6285 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.3 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : GAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36634-38338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUKR01000152.1 Pseudomonas aeruginosa strain 991.rep2_PAER 407_48821_838835, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36634 28 100.0 32 ............................ AGTACGGGCTGAAGGATCGCGCCGAGCGCGGC 36694 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 36754 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 36814 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 36874 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 36934 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 36994 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 37054 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 37114 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 37174 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 37234 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 37294 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 37354 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 37415 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 37475 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 37535 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 37595 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 37655 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 37715 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 37775 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 37835 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 37891 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 37951 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 38011 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 38071 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 38131 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 38191 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 38251 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 38311 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48682-47213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUKR01000152.1 Pseudomonas aeruginosa strain 991.rep2_PAER 407_48821_838835, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48681 28 100.0 32 ............................ TCGGTGAGCTGGGCTTCTTCCGGGTGACTCAC 48621 28 100.0 32 ............................ GTGAGCGTCGACGTGATCGCCAAGGACATCAG 48561 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 48501 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 48441 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 48381 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 48321 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 48261 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 48201 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 48141 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 48081 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 48021 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 47961 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 47901 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 47841 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 47781 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 47721 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 47661 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 47601 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 47541 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 47481 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 47421 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 47361 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 47301 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 47240 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //