Array 1 637-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCQ01000022.1 Salmonella enterica subsp. enterica serovar Haifa strain BCW_2692 NODE_22_length_88998_cov_3.86125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 636 29 100.0 32 ............................. TAAACACATTGACTTTATCGCGATAAGCTATA 575 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 514 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 453 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 392 29 100.0 32 ............................. GTTGTAGCGAATTGCCCGCTGTATCGTGTCGT 331 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 270 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 209 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 148 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 87 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 26 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : A # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163794-161705 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCQ01000009.1 Salmonella enterica subsp. enterica serovar Haifa strain BCW_2692 NODE_9_length_181594_cov_4.13004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 163793 29 100.0 33 ............................. TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTGC 163731 29 100.0 33 ............................. GTGCGCGTGGAGCGCCTTAATTCAATTACTGAA 163669 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 163608 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 163547 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 163486 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 163425 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 163364 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 163303 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 163242 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 163181 29 100.0 32 ............................. AAACGGCGCTCGTTTCAGCGGCAACGGCTGTG 163120 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 163058 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 162997 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 162935 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 162874 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 162813 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 162752 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 162691 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 162630 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 162528 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 162467 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 162405 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 162344 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 162283 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 162222 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 162161 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 162100 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 162039 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 161978 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 161917 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 161856 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 161795 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 161734 29 96.6 0 ............T................ | A [161707] ========== ====== ====== ====== ============================= ========================================================================= ================== 34 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181545-180053 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCQ01000009.1 Salmonella enterica subsp. enterica serovar Haifa strain BCW_2692 NODE_9_length_181594_cov_4.13004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181544 29 100.0 32 ............................. GTGGTCCTCAAGTGAGTCTTTGGAAAAACCCA 181483 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 181422 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 181361 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 181300 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 181239 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 181178 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 181117 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 181056 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 180995 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 180934 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 180873 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 180812 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 180751 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 180690 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 180629 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 180568 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 180507 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 180446 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 180385 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 180324 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 180263 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 180202 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 180141 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 180080 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCTCTTCCGATCTAACCGCAGCGGGAAAACGTCCAAGTGCCCATATCCC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //