Array 1 11772-13060 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXE01000142.1 Pseudomonas aeruginosa isolate Q, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11772 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 11832 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 11891 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 11951 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 12011 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 12071 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 12131 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 12191 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 12252 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 12312 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 12372 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 12432 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 12492 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 12552 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 12612 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 12673 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 12733 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 12793 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 12853 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 12913 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 12973 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 13033 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 23464-21934 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXE01000142.1 Pseudomonas aeruginosa isolate Q, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23463 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 23403 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 23343 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 23283 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 23223 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 23163 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 23102 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 23042 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 22982 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 22922 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 22862 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 22802 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 22742 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 22682 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 22622 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 22562 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 22502 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 22442 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 22382 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 22322 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 22262 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 22202 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 22142 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 22082 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 22022 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 21961 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //