Array 1 11-278 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFR01000198.1 Salinivibrio costicola subsp. alcaliphilus strain DSM 16359 contig-100_197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 ............................ ACTTGTCCGCGCCGGTAGTGCCGATGCGACGG 71 28 100.0 32 ............................ ATAAGCAAGAAAGGACTTTTGTTTATATGTAC 131 28 96.4 32 A........................... TTCTGCATACCCAGAAAGTGACATTTCAGCCA 191 28 100.0 32 ............................ ACTTGTCCGCGCCGGTAGTGCCGATGCGACGG 251 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTTCAGCCAG # Right flank : A # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [10.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29663-30470 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFR01000039.1 Salinivibrio costicola subsp. alcaliphilus strain DSM 16359 contig-100_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29663 28 100.0 32 ............................ ACCGAAAAAAGGCCGCTGTCTTTTGCGCCACT 29723 28 100.0 32 ............................ GGTCACGCGCTCGACGCGAATCGAAAATGGCC 29783 28 100.0 32 ............................ GGTGCAACCCGCGATTTCCTTGATCGCTTGTG 29843 28 100.0 32 ............................ ACGGAAGCTTGTTGAAGTCACCGAACGTGATC 29903 28 100.0 32 ............................ TAGCTACATGCGAACGCGCTGGCCTTGGTCGT 29963 28 100.0 32 ............................ TCATGTTATCTGAAGCTTCGCTTGCATTAGAT 30023 28 100.0 32 ............................ GAAGGAAATTAAAATCACGCTGACAGTTGCCG 30083 28 100.0 32 ............................ ATCTCGCGCATTAAATTCAAGGCGCCGTTGGT 30143 28 100.0 32 ............................ AGAAAACTGGCTGGAATCCAGCGCAATACCAA 30203 28 100.0 32 ............................ TCTAGTTTTCTTTTCAACAGGCGTTCCGCCTT 30263 28 100.0 32 ............................ ACTACAAGAAAGCGATTCTATCTCGTAGCTCG 30323 28 100.0 32 ............................ TGATTGTTAAAGAGCGATATCTAGAAGCGCAC 30383 28 100.0 32 ............................ ACTTGTCCGCGCCGGTAGTGCCGATGCGACGG 30443 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCGCTAAACCTATCACTTTTTGGCGGATTTTATTTTGTATTGCGTCTTGCAATGGCTACGTAAGACGTGCTCTGAACGTAGGGCCTGATGCTTGGTTTTACGCCCGCGCGTCCGCTCACGCCATACCTTAAAGCTGCGTGGTTTTAACTCACGCCGCATCAAAGCGATGACGTCATCCTGACGCAAGCCATACAGCGTCTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCAATGATCCGGTCAATGTCTGCCGGTTGCTCGTTCAATGCCATATCGGTCTCCTTGATCTAGTGGCAAACAGTACGCGTAGAGCATGAAAGACCGATCAGCGTGAGCCCTCAGACTGAGCAATGCTTTTACCCTTGTTTTTGGGATATTTAGAAATAAATAGCGAATACAGTCAGTTACGACTGGGCGTTTTTAATAAGGGTAAAAAACGATTTTTATCCTAACGGCCTGTTGTCACAGGCTATTATTTCGTTATTCTATA # Right flank : AGATTAACGACCTGGCCGTCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCGCGGCGTAAATCACACCAAGTTTGTACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACATCGGTGGTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2093-144 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFR01000064.1 Salinivibrio costicola subsp. alcaliphilus strain DSM 16359 contig-100_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2092 28 100.0 32 ............................ AACGTAGTGTGTCAGCTTGTTTCTGCGGTCTT 2032 28 100.0 32 ............................ TGCCAATATTCCGAATGTAAGTTAGACAGATG 1972 28 100.0 32 ............................ ACCGCAACGTTGAGCATCACGCTTACCATTGC 1912 28 100.0 32 ............................ AATCGGTGATCTGGAGTACAGCAAAAGCGGAT 1852 28 100.0 32 ............................ CACCACGCCGGTGAACGGTAATTCCGGAATGC 1792 28 100.0 32 ............................ GCTCACGTATGGCTAACTCAAGCTGGCATCAC 1732 28 100.0 32 ............................ AAGTCGTAGGCTTCATCAACAGTTAGCTCAAT 1672 28 100.0 32 ............................ ATAGAAATCACACGTGTGCTCAAAGGCCGCTT 1612 28 100.0 32 ............................ GTTAAATCGCGCAAACCGCACTGGAATGTGTC 1552 28 100.0 32 ............................ AACCTGACGTGCGGCCTGCACTATCTTCAAAA 1492 28 100.0 32 ............................ GTCCAAAAGAATTGGATGTAGCGGGTGGCTCT 1432 28 100.0 32 ............................ TTCCGGCCATCGTTACACTTCCTCTCCAAACT 1372 28 100.0 32 ............................ TTCTTCGACCACGGTGACATACACGATGCACT 1312 28 100.0 32 ............................ TTTCTTCAAACGCGGTGACAGCAATGTGATTG 1252 28 100.0 32 ............................ ACTAACACCCCGTGCTTTTGCATTTTCCTTAT 1192 28 100.0 32 ............................ TGGTTGCGATAGGTTCGCAACCTGATTGACGA 1132 28 100.0 32 ............................ ACGCTGGTCGATGCCTTTCGCCTCGGCTGGGT 1072 28 100.0 32 ............................ TTAAACGCGTCTCAGCGCTTCTTTTAGGCCTT 1012 28 100.0 32 ............................ AGCCACACAGAGCCCCCCGCTACGTCCAAAAG 952 28 100.0 32 ............................ GCCACCCCGGCGATTCATTAAAAAAGGGGCAT 892 28 100.0 33 ............................ TCCTACTGGTGAAGTGTATAAGCGCTTTTTCGA 831 28 100.0 32 ............................ GGACTCGGTTAATAACTCTGCGGTTAGCTTGC 771 28 100.0 32 ............................ TGCCAGCACTGTAAATGTGATGTCTATTATCT 711 28 100.0 32 ............................ ATTATCGTCGCGCTTGGGTACTTTGTCGGTAA 651 28 100.0 32 ............................ TGTCAAATATGTCTGGCTGGATGTTTGAATCA 591 28 100.0 32 ............................ TCTGAAAAATGCGGGTGGTCAGCCCGCTGGCT 531 28 100.0 32 ............................ CAAATAAAAAAGGGCGCCGAAGCGCCCTTGGT 471 28 100.0 32 ............................ AGTCTGAGAAGTCCAAGCGTAAAAACGCTGAA 411 28 100.0 32 ............................ GAAATGGATATTTCCGGCGTTCTGCGTGTTAC 351 28 100.0 32 ............................ AGCCATTTGCTGTACCAGGGCGCGACGGTCGA 291 28 100.0 32 ............................ CACACAAACGGTTTCACATAGTGCGATTGTGA 231 28 100.0 32 ............................ TGACGTTTCCGCGTGAGCGAAACTGTGTGACG 171 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGATGTGACTTACGTAAGTTTTGTGCGCAAGCAGGTGAAATCACCTGAACGGATAGAGCGAAATATGCAACAAAAAGCGGCTCTATGGGCTGCTAAATCTGGTCAATCGCTTTCGGAATGCCTAGCCGTGCTCGAACAAAGCAAGCCAACAGAACCATGCCGTTTGCCGTTTATCTACCTACATAGCCAGCAAACGAAGCAGCGTTCACCCGACAAAAGCAGCAAGTTCCCGTTGTTTATTCAGATGCAGCAGCAAAGTACATCACAAGATGGTAGCTTCGATTGCTATGGTTTGAGTAGCAAAGTGAATGGGCAATCAGCATTGGCTACCGTTCCACATTTTTAAATTGAACGAAAAAGGGTATTTTTACCCTTTATTTTTGCTCTTTAAAAATAACCTTTAAATACAATAGGTTACAATGGGTGGGTTTTTATAAGATAAAAATACAATTTTTACCATAACTGACTGTTGTAACTTATTTTTATTGATTTATTCTATT # Right flank : AAGATTAACGACCTGGCCGTCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTCGGATGGCGCGCGGCGTAAATCACACCAAGTTTGTACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACATCGGTGGTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //