Array 1 55-1470 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWEW01000032.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CUS10 PROKKA_contig000032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 55 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 117 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 178 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 239 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 300 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 361 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 422 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 483 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 544 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 605 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 666 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 727 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 789 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 892 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 953 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1014 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1075 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1136 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1197 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1258 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1319 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1380 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1441 29 96.6 0 A............................ | A [1467] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGCGCCAGCGGGGATAAACCGTGAGCAACGACAGTAAATAATTTTTCGTGCTGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5325-6878 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWEW01000025.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CUS10 PROKKA_contig000025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5325 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 5386 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 5447 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5508 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5569 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5630 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5691 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5752 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5813 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5874 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5935 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5996 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6057 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6118 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6179 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6240 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6301 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 6362 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6424 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6485 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6546 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6607 29 93.1 32 A............T............... TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6668 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6729 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6790 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6851 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //