Array 1 4892-3921 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXX01000055.1 Mannheimia haemolytica strain L02A contig00055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4891 32 100.0 36 ................................ CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 4823 32 100.0 35 ................................ CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAA 4756 32 100.0 36 ................................ CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 4688 32 100.0 35 ................................ GTGGCACAGTAACACGAGCAGATGCTGATAAACGC 4621 32 100.0 34 ................................ CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG 4555 32 100.0 36 ................................ TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 4487 32 100.0 34 ................................ TGCGATTTTTGGATTTTTCGGGCGATAAATGATA 4421 32 96.9 34 .....................T.......... TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG 4355 32 93.8 35 G....................T.......... TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA 4288 32 93.8 34 G....................T.......... TTTACCGTTTACCGATTGGATTTTAATGCTAGAG 4222 32 93.8 35 G....................T.......... CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC 4155 32 93.8 35 G....................T.......... CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC 4088 32 93.8 37 G....................T.......... AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA 4019 32 93.8 35 G....................T.......... CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG 3952 32 87.5 0 G.........T..........T.T........ | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 96.5 35 CCAGCCACCTACGCGTGGCTGCGAATTGAAAC # Left flank : TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA # Right flank : GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCACCTACGCGTGGCTGCGAATTGAAAC # Alternate repeat : CAGCCACCTACGCGTGGCTGCGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //