Array 1 17874-16930 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGPD01000050.1 Escherichia coli strain MH14-074D contig_32_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17873 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 17812 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 17751 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 17690 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 17629 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 17568 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 17507 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 17446 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 17385 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 17324 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 17263 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 17202 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 17141 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 17080 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 17019 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 16958 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8895-10753 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGPD01000026.1 Escherichia coli strain MH14-074D contig_19_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8895 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 8956 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 9017 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 9078 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 9139 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 9200 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 9261 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 9322 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 9383 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 9444 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 9505 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 9566 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 9627 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 9688 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 9749 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 9810 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 9871 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 9932 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 9993 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 10054 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 10115 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 10176 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 10237 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 10298 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 10359 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 10420 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 10481 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 10542 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 10603 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 10664 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 10725 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //