Array 1 94569-96639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHANQ010000013.1 Vibrio cholerae strain C19x.b Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94569 28 100.0 31 ............................ TATGAAGCGCGTTCATAATGATGACCGATTT 94628 28 100.0 32 ............................ ACTCAGAACCGAATACCGTTTTCTTGCAAATC 94688 28 100.0 33 ............................ CATGAAAAGACCCCAACCTGGGGGAGTGCCTTG 94749 28 100.0 32 ............................ TGTTCAGACCAAGAACCTGTTGAACCCGTTCC 94809 28 100.0 32 ............................ AATATGGAGCATGAATACGCCAAGGATATTGG 94869 28 100.0 32 ............................ AGTTTGCAAAAACTATCGGCATTGGCCCTAAC 94929 28 100.0 32 ............................ TGACTTAGGCCACTTTTGACGACTTGCACCGG 94989 28 100.0 32 ............................ CAGAATCTACTTTTTTCACCTTGACCAACTAG 95049 28 100.0 32 ............................ ATAGAAAGAGAGGTTAACAAAGGCAACGTTGA 95109 28 100.0 32 ............................ CAAAGGATCACGTTTTTCTCAGCGACTTGCCT 95169 28 100.0 32 ............................ ATGTTTTTTATGTTTGGGGATCCTGTTCGCCA 95229 28 100.0 32 ............................ ATATTGGCGCCTTTAGAGTTCTCCCAACCTTT 95289 28 100.0 32 ............................ GTTTGCTGAAATCATCGAAGCAGTTGAAGAAA 95349 28 100.0 33 ............................ CCTAGGGATTCCATCAGCCACGCGCTGCTCAAT 95410 28 100.0 33 ............................ AGTAAATGGGTTTTTCATCGAGCAGCTTTAACA 95471 28 100.0 32 ............................ GCTCAAGAAAAAAGAGCGCGAGCAAGTCCGTG 95531 28 100.0 32 ............................ ATTACCACGATCCCATTGCTCGGAACCCCATT 95591 28 100.0 32 ............................ GTGAGGATGACCCGATATGCACACAGCTCCGC 95651 28 100.0 32 ............................ TACTGGCGAGATATCCACATGAGCAAACCGAG 95711 28 100.0 32 ............................ ACCGTGCGCATCAGCAGAAAGAAACGAAACAT 95771 28 100.0 32 ............................ CGTGTAATCGACACCCGTCAAAGCGATAACAG 95831 28 100.0 32 ............................ TTTAGGGCGGGGCTGCATAGCAGGGCAAGTGG 95891 28 100.0 32 ............................ TGCACATCGAAGGGGTGCGCGATGTCGATTTG 95951 28 100.0 32 ............................ GTGATAAACGTTCATTTCGCTTGGATAGGTCA 96011 28 100.0 32 ............................ ATCCTAAAGGCACCTTGCCTGCTAACGTGGGC 96071 28 100.0 32 ............................ TTGCGAATACCTCGTTGATGGTGTAGATGCGG 96131 28 100.0 32 ............................ TGGCGACCATGTGTTATATGATCTCTTTGATT 96191 28 100.0 32 ............................ TGTCACGCTCTCAACGTAGTTCTTGGTAATGA 96251 28 100.0 32 ............................ AATAGGGGAAAATGAATGAAATACGCACAAGG 96311 28 100.0 32 ............................ TTTATTACCAGTCTTGGCAGGCTGTCCAGCTC 96371 28 100.0 32 ............................ GCGCTCCCACTTTGCTATGGTCTGCTGTGTAA 96431 28 100.0 32 ............................ AGATCGACACAGTAGTTGATTCGGTCAACTTG 96491 28 96.4 33 ...........T................ AGCACAAACCGCCGCTGATCACTTGGCGATTCA 96552 28 96.4 32 ...........T................ CGTAGGCTGGTTTATGCAGGCTTTTGGGCTGG 96612 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ATCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGGAATTGGTCGAAGAGAGCAAAACGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAATTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGATAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGTAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTACCTTCCATCGCCTGAGTAAACTCTTCTGCTGACATGCGAATGATCTGCACGTTGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //