Array 1 210009-208788 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJHJM010000001.1 Streptococcus salivarius isolate AMBR075, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    210008	    36	 100.0	    30	....................................	GCGAACAAATACCTAGCGATTTCTCACACA	
    209942	    36	 100.0	    30	....................................	ACGTTCTATTTTCAAGCTCTTTGAAATTAC	
    209876	    36	 100.0	    30	....................................	ACTGTAACAAGAGAGAGTGACACCGTCTAT	
    209810	    36	 100.0	    30	....................................	AAGCCTCCCTAGAGATACTTAATCAATGGG	
    209744	    36	 100.0	    30	....................................	GTGGTAATTGATTAGCTTATTCTACAAATT	
    209678	    36	 100.0	    29	....................................	CGGAATTGAGGACATCTTTAAGCAAATCA 	
    209613	    36	 100.0	    30	....................................	GGGGTTGAAATCCCTTATATTGACAAGTAT	
    209547	    36	 100.0	    30	....................................	TTGACGGTTCTGATTTCGAACGCACAGAAC	
    209481	    36	 100.0	    30	....................................	TTGTCACTAGCTCACGAAAATACCAAGCTC	
    209415	    36	 100.0	    30	....................................	GCATCATAGCATGGAAGCAGCATACATAGA	
    209349	    36	 100.0	    30	....................................	TTGTTACTGGATTTATTGCAGGCGTGCCAT	
    209283	    36	 100.0	    30	....................................	TCAATACCAGTCCACTTGATAGGGTCTTCG	
    209217	    36	 100.0	    30	....................................	GTGGTATTGCTTCAGGTAAGGCTAGACGTA	
    209151	    36	 100.0	    29	....................................	CCTTGCATGGTTGTCTGGTTGGATTGCTA 	
    209086	    36	 100.0	    30	....................................	TGCCAGCATCATTCAAAGCAATCGCTGACC	
    209020	    36	 100.0	    30	....................................	TTGCCCTCGGTTCACTGATAGCGTGGGTTG	
    208954	    36	 100.0	    30	....................................	GTGGACGCTCATTAAACGCTTCATTCATTC	
    208888	    36	 100.0	    30	....................................	TGAGCAGTTTTGGACGGAAAGCACAACCCC	
    208822	    35	  83.3	     0	T..........T.-...........G........GT	|                             	
==========	======	======	======	====================================	==============================	==================
        19	    36	  99.1	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	                              	       

# Left flank :   TTGATAGTTTTATTTCAGAGGAATCTTATGATAGTTTTTATAAGCAAATTGGTCAGCTAGTCAAAAAGTATCCAAATCTAAACTTAATTTTATTTCCAAGTAATCAAGGCTATTTAAAGATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAAGTGGAGCATTTGTACGATATTGAGTTTATGTATGACAGGGTAAAGAAACATTATCCAAGTAATAATTTCCCACCGAGAGAGGGTTTTAGGAAATCCTTAGAGAATGTGACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCACACTTGTTGATTCTGTAATTTTGAATATCCTAAATCAGCTGTTTCAATTTAATTACCGTATAAGATATTCACAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGGACAGTTATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG
# Right flank :  TTGATTAATTCAACTAAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGGTTGTCAGGCTGTCCGACCTCTTTGACCTCAGTCAAATTAAGGATAGGAAGGCTCTGTTTGAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTTACCCACGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATCCCAAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAAACAAATCCGGTATAGGTGACCTTCTTGCCTACGAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGAA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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