Array 1 8782-10746 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKF01000044.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8782 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 8843 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8904 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 8965 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 9026 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 9087 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 9148 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 9210 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 9271 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 9332 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9393 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9454 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9515 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9576 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9637 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9698 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9759 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9820 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9881 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9942 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 10003 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 10065 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10168 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10229 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10290 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10351 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 10412 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 10473 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10534 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10595 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10656 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10717 29 96.6 0 A............................ | A [10743] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8748-7255 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKF01000157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8747 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8686 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8625 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8564 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8503 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8442 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8381 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8320 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8259 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8198 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8137 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 8076 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 8015 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7954 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 7893 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7832 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7770 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7709 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7648 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7587 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7526 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7465 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7404 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7343 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7282 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //