Array 1 294-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNAB01000180.1 Neisseria meningitidis strain NM2524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 293 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 227 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 161 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 95 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CTCCCTTTCTCATTTCGCAGTGCTACAATATGATGCAGGCTGCTCCGTCATCGTCTGC # Right flank : TTTTCTTTTTGTAATTGTTCTGCCTTTTTTAGTTGTAGCTCCCTTTCTCATTTCGCAGTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 26658-25633 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNAB01000027.1 Neisseria meningitidis strain NM2524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26657 36 94.4 30 ........G...A....................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 26591 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 26525 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 26459 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 26393 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 26327 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 26261 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 26195 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 26129 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 26063 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 25997 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 25931 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 25865 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 25800 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 25734 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 25668 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //