Array 1 13890-14089 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJCD01000028.1 Halorubrum lacusprofundi strain HLS1 map unlocalized plasmid pR1SE2 NODE_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================ ================== 13890 26 100.0 32 .......................... ACCCGAGAGTGACTCTGTACATTTCCATCTCC 13948 26 92.3 32 .C......................C. GAACGAGGCCGTCATTGTGCATCCCCACCTCC 14006 26 100.0 32 .......................... GGCCGAGAGTGACTCTGTGCATCCTCACCCCT 14064 26 88.5 0 ........G..............TC. | ========== ====== ====== ====== ========================== ================================ ================== 4 26 95.2 32 CACACACCATTTTGCGAGTGTTAGTT # Left flank : GCCTCACGAGGTGGTCTGAACAGTACGATGACCCGACGATTATCCTGTTAGGAGGAACGGACTACATCGATCCCCTGGAAGACGTGTACAGTCGTGTCCCGGCTACTGTCCGGTTCCCGCTTCAGGAAGCTGAGTTACCTGGAATGATGGCGCAAATGTCGTGGATGTCTGATCGCGCTGAAGAACGACAGGCCTGAGTCTGGAGCTGCGAATTACTTTTACTGTCGCAGAAGTCACTGACCGTGATGGAACTTTCAGAAGGCGACCGGCTTCGAAGCCCGTCTGGAGATGAATGGATTGTCGATAGTGTGTCCGGAGACTCCGCTGAAGTGTCTGAAATCGGGGTCGCACTTCCACAGTCGATAACCCTCACCGAATACGAATTCAAGAAAGCAAAGGGCTGGGAACGGCTCTAAACTGCGGACTGCATTCACTGAGTCTCGATGAGTGCGTACCCCGTGATGTTCCCTGTATTCGGATTTTCATAATAAATCCCCCCT # Right flank : TGAAGATGAGTATAATATGTACTGTCTGATTGACTGCACCTATAATATATACTTTATTGTTTAGGTAAAGTAAGTAAGAGAGAACAGAGAGTAGAGCGTCAAAGAACAGCATCTCCATTTTCTTTTTCTAATTGTCTTTTGTCTTTATAAGTCATTAATACGTTTCATCTAAAGCAACATAACGGGTTGTCTGAGACTCCTCGGCAAAAACTGACGGTTACTATCGCCACCCCACTTTCTAATTTCTAACACTCGCAAAACGGTGTGTCTGTCCTAACCTTACACTCGCAAAATGGTGTGGGACTCACCAGAAATCGCTAACACTCGCAAAACGGTGTGTGTCTCCCCGGCTATCTTTTCACAAGGAGAGAATCCCGCCGTTTACGGCGGGCGTGAATCCGACACTTGCTGACCAGTCCACCGATGACACTCTGGCCGGATATTCCACGGCAATCGACACCATTAAGTAACTGGTTCTACATAGGCTATATGCGGCAAAA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACACACCATTTTGCGAGTGTTAGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 51-407 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJCD01000254.1 Halorubrum lacusprofundi strain HLS1 NODE_379, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 51 30 96.7 36 .................T............ GCGGCGCGTACACCGACGCGGGGAAGAGCTCGTTCT 117 30 100.0 35 .............................. ATTCAGGATCACGCCGTTCGGTTGAAGGCGATGAC 182 30 100.0 35 .............................. TCAAGTCGGGCATGACTACACTTGGCTTGGGCATC 247 30 100.0 36 .............................. GACGCACGTGCATCGACGCACGGAAGGGCTCGTTCT 313 30 90.0 35 C.........A.G................. ATCCAGGACCACTCCGCTCGATAGAAGGCGCTGAC 378 30 90.0 0 ......C.A...................C. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 96.1 36 GCTTCAATCCCTCACAGGTCCGTCTGAAAC # Left flank : CGGTCCGTCTTAAACCGCGCCGCAACACCGACGCGGTCCGATGGGGGGTAG # Right flank : TCAACTGCGGCCTCACTCCACTCGGCCTGCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATCCCTCACAGGTCCGTCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //