Array 1 50438-51966 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPKB01000028.1 Vibrio navarrensis strain VN-0392 NODE_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50438 28 100.0 32 ............................ TGATAGGTACACCTGCGGCCAGCCCTCTTCCA 50498 28 100.0 32 ............................ TAAAGAACTTGAAGCGCCGCTAAGTGCCTTAC 50558 28 100.0 32 ............................ TTTGATTTCAACAATCAACGCCCTGACTATTA 50618 28 100.0 32 ............................ TGGAACGTTTCGCCTTTACGATCTGGGCATGG 50678 28 100.0 33 ............................ ATAACTGTTACGCGGCCCAACCAGGCTAGTTTT 50739 28 100.0 32 ............................ TCATGTGGCTGATAATCTTTTCAATCACATGT 50799 28 100.0 32 ............................ ATGCGCTCGTATTCTTTTTCACGCTCAAGCGC 50859 28 100.0 32 ............................ TTCACAGCTGGGTCAACAATGATTGTTTTTTC 50919 28 100.0 32 ............................ ATCACTATGAGAAGTTTTAAAAACGCTGACAG 50979 28 100.0 32 ............................ TTTACTTGGCCGACGCATGCCGCTCGGCATCG 51039 28 100.0 32 ............................ ACAAACCGAGCTTTTACCTGGCTTAGTTGAAA 51099 28 100.0 32 ............................ TCAAAGATTGAAGACGCCCAAAAGCTGGATGC 51159 28 100.0 32 ............................ GCTTTCGCCTCGGGTGAAATCGATATTTCTGC 51219 28 100.0 32 ............................ TTAACCGTCGATGATTCGTCATCAGTACCACC 51279 28 100.0 32 ............................ GTTCTTAAGGTGTTTGGTGATAACGCTGAGCT 51339 28 100.0 32 ............................ GTAAACGTTGTGACCTTGCAGAATTTTTGCCG 51399 28 96.4 32 ......A..................... TAGGTATACGCTTTCATTTAGCAAACGCACTT 51459 28 100.0 32 ............................ CTGTTTTTCTTGTTCGTCAGCGATGCCACGAA 51519 28 100.0 32 ............................ GCGATAACGGGCACCGACTACCACCTCAAGAT 51579 28 100.0 32 ............................ AGTATGGCCATCATCTGCTACTCGATCGCTAT 51639 28 100.0 32 ............................ TGACCGACGTCTGGCCGCGTGCAGTATGCAAA 51699 28 100.0 32 ............................ CACATCCTGCACGGCAATCTTAAACTGAAAGA 51759 28 100.0 32 ............................ TGATGTAATCATTTGATAGCTCCTACGCTACG 51819 28 100.0 32 ............................ TGCAATCACTTCTCCAGCTTTTATCTTGTTTG 51879 28 96.4 32 .............T.............. TATTCTTCGCGCATCCCACGCGCCAGCATAAG 51939 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AACAAAAACGCCACGAGCAAAGCTGGTGGCGTTAACATCAATTCTAATCTAATCATAGCAATCGAGCATTTTAGATGCGCCCGTACCTCAAGCCGTACCCAGAGCGATCTTTGCTACAATTAAAAACCGTTTTAACCTTTATTTAATGCGCTCTAACATCACACCCGCTTCCATGTGATGGGTGTAAGGGAACTGGTCAAACAGAGCGAAACGGGTAATGGTGTGGGTTTCGCTCAAGATTTCGAGGTTCTCGAGCAGGGTCTCTGGGTTGCACGAAATGTACAAAATGCGCTCATAGCCTTGCACCATTTTACAGGTGTCGATGTCCATACCTGCGCGCGGAGGATCGACAAAAATCGTATTGCAGTTGTAGCTCTTCAAATCTACGCCCGCATCTTTAAGGCGGCGAAACTCGCGTTTGCCTTCCATCGCTTCGGTGAATTCTTCCGCTGACATACGGATGATCTGCACGTTCCCAATTTTGTTGGCGGCAATGTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 158544-159953 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPKB01000008.1 Vibrio navarrensis strain VN-0392 NODE_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 158544 32 100.0 33 ................................ AAATTTGATTAATCGGCGACTAGTATCACCCTC 158609 32 100.0 33 ................................ AGGATTTAAACCCTTGGTCGAAGACGCGGTCAG 158674 32 100.0 34 ................................ CGGCAAACTTTTACCGAAAGCAGGACTGGTATCA 158740 32 100.0 35 ................................ TCGTAACCGATGGCGCTAAGTAGACGTTCATTATC 158807 32 100.0 33 ................................ TCGAGCTTGTACAGAACGGTTGCCAACCTCTCA 158872 32 100.0 35 ................................ TCGTACCATTCATCATCTTTGCGCGGATCGTCACG 158939 32 100.0 33 ................................ TCCTTTAGCGGCCAATAATTCCCCCGTCAATTG 159004 32 100.0 33 ................................ GTCATGAGTTACAAGCGTTCATCGGCACGAGAT 159069 32 100.0 34 ................................ AGAGCATGCGTAAACGACACAAATATCTGAACAC 159135 32 100.0 33 ................................ TTGAAACTTTTCGAGCTTAAGCATGTTGTGACT 159200 32 100.0 34 ................................ TTAATGCCTCGAATGTGCATTGGTTTTTTGGATA 159266 32 100.0 35 ................................ ATCCACTCTACGTCCGAACGTTTCCTTTGATACGT 159333 32 100.0 33 ................................ TTTTGCGAGCTTCCTACGTTCCCAGTTCTTGGC 159398 32 100.0 34 ................................ CACAAAGCCAGAATCAAAGTTGCTCGCATTCAGG 159464 32 100.0 33 ................................ TAATGAACTTCGGGCATAACGCCTTGAAACAAG 159529 32 100.0 33 ................................ ATGCTCACTCCCTCCCGCGCTGATTGAACTGCG 159594 32 100.0 33 ................................ TTTGGATAGAGTGATGTTCTTTTTGGCTAAGAA 159659 32 100.0 34 ................................ CAGTGCAGTGGTGAACTGGCGCGGATTAACATGG 159725 32 100.0 34 ................................ CTAACCGTCTTAGCTAAAGCGAGTTGCTTCTCAG 159791 32 100.0 33 ................................ TGCACTGTGGAAGGTGATCCAGTGGGTATCTTC 159856 32 100.0 34 ................................ CGTTTAAGATTGACTACCAAGAACACGTTGGTCT 159922 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 22 32 100.0 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : ATTTGTGATCAAAAAATAAGGAGAGTGCGCCATGATGGTATTGGTCACCTACGATGTATCTTTTGCTAGTGAAGATGGACAAAAACGTCTCAGGCAATTAGCAAAGGTGTGTTTAGATTATGGTGTAAGGGTGCAATATTCTGTATTTGAATGCGAGATAGATGCGGCGCAATGGCTGCGCTTTAAAAATAAGCTGTTGTCAATTTACGACCCTGAAGTCGACAGTTTGCGTTTTTATAAGCTCGGCAAAAACTGGCAAAACAAAGTAGAGCACCACGGCGCGAAAGAAGCGATAGATATATTCAGAGATACCCTAATTTTATAATCGCTAGGCTTGAGTTCTCAGTAAAACACTGGGGAGCTAGCGATTGCATAAGTTCTTTAAAAATAGAGCAAATATTTATTTTTATAGCTTTACACCAAATAGTTTTCTTCTACCGCGTAAAGTTAGCGGCAAACCATAATATATGCTAGTTTATACGTGCCTTTCACAATAGGCA # Right flank : CCACACGATAACCCATCTCTCTAAGCTTGATATGGTCGCGCCTCCCGCTTGATTCCGGACGACCAAGAAGGCCACAGCGACAGCGACGGTGACGGCATTCCTGATTATCTGGATGCCATCTCTGACTGCAACGTGATTCAGCAAACGGTAGCAGAGAACGACAGCTTCCTCATTGAAGGTCAACCTGGCGTTTGTTTACGTAAAGGTGTCACCATAGTGGAAAACCAGACAGGTGGAGCGCGCTTGCTGGATAATGAGCTGACGGTCGACAACGAGGCGGACAACATTGGTGGTATTTTTGACTTTGTGGCGACCAACTTGCCACAACCCGGTCAGAGCTATCAACTGGTTATGCCGCAGCGTTTGCCTGTTCCGGCGAATGCCGTTTATCGTAAGTTCCGAGCCGATGTGGGTTGGGTCGATTTTGTTGAAGATGCTGACAACTCGATTGCGTCTACGTCGGGTGAAGCGGGCTACTGTCCGCCTCCGGGAGACAGTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 2204-1936 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPKB01000048.1 Vibrio navarrensis strain VN-0392 NODE_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2203 28 100.0 32 ............................ TCTAGTCTAATGTTATTTATCGGCATGACTTT 2143 28 100.0 32 ............................ TGCCGAAGAGGCGTATTTTCACAAAGGCCGTG 2083 28 100.0 32 ............................ CGATAGAGCTAATGTTAGAGAAGCACGCCTTT 2023 28 96.4 32 .........T.................. TGCTCACCGTCATCGCCGGCATACCAGAGCAC 1963 28 92.9 0 ......................C.A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATTGAGTACTGGGATTGTGTGAGGTCAGCAAGTTTGGCGCAAAGTCGCTTTGGCAGTTTTGCTTTCGTTTTGAGGAGTCTTCCGAAAATGAGTTCTCAAAAATTACTGGTTTCAAAGCAAGTGAACGGTTACAAAGTTTGAGTCATTCCGGGTTTTAAAGCTCAAGTGGTTTGCCAGTTTTCTAAATCAAGTTAATCTCAGGTTTGATCAATCTAAGATGCTGAAATTTAAGCTAACAAACTGCTTAAGAGGGATTCGCAATGCGTGGCATTTTCAGCATGCGTTGGGTTTTGTGACTAAAGCGGTGTGCGGTACTTTCGCAGTGCATTGCTCACCCCTTAGCAGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTTGTTGAATCTTAACTTGTTGATTTATATTAATAATAAATCGAGTGAAAAACAAAAGGTTATTTTGAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCCTC # Right flank : TATTGGTAACTTTGGCACTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGACTTGGCACGCGTGGCATTTTCGGTTTGCAGTTTGTTTAGTGGTTAAGGTGTTATGCGGTCACTTTTGTATTGCGTGCCGGCACCCCTTAACGCGGCGTTATGTGTATGATGAGATGGTGAATCTATGGAAATAAATGAACATTACTATCAGAGACTTAACTCATCTTTTGATGATCTTTGTGAATGTACAGATTTTTGTAACGAACTCGAAGTAATTGAAGACTCAGACAGTATTCTATGTAAGGCCCTTACGATTTCACTTATTGTCACTTACGCTAGAAATTTCGCTAGCGCATACTCTTACCCTCGTCTTGGTAAAGACGAATCAAAAAAGCTCAAAAGTAAATACGATGAGTTGACAAAGTCCTGGCTTGAGACGCTGCCTGATGAAATGAAATGTTTTCATGAGTCAGTTCTCGAAAGGAGAAATAGCTCAGTTGCACATT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //