Array 1 90922-94063 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGGG01000004.1 Corynebacterium striatum strain 2038 Contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 90922 29 96.6 32 ............................G CCTTCAACAACGGAGCTTTATAGGCAGGTGTG 90983 29 100.0 32 ............................. TTCGAGCTCGTCAGCTATGGCGGGTAGGTGCC 91044 29 100.0 32 ............................. CGACGAATCAGCGAGAACCTGCAACGCACTAA 91105 29 100.0 32 ............................. TCCTTCACCGCGGCAAACACCGCCGCAAGTAC 91166 29 96.6 32 ............................G GCATGGCAGCGGCTGAATCCACCGACGATGTT 91227 29 100.0 32 ............................. CATCCAGCGGTTAGATCGTGAAGTAGGGGAGC 91288 29 100.0 32 ............................. GGGAAAGTCGGTAATCATCGCGTAACTGATTA 91349 29 96.6 32 ............................A AGGACGGGGAACACAAGCTCAAATGGGCTTGG 91410 29 100.0 32 ............................. CTGCGCGGTCAGGGGCTTGTGGTTAGAGTTTT 91471 29 100.0 32 ............................. AAATCAAAGGATACATGATGGCATCCATCAAA 91532 29 96.6 32 ............................G GAACCCCAGGACCGGCACTTTGGTCAGATGGA 91593 29 100.0 32 ............................. TCGAAGTCACACAACACCTACTCCGAACTTGG 91654 29 100.0 32 ............................. GAGCGGCGCTGACATAAATTTTTGCCGTGTTA 91715 29 100.0 32 ............................. AGCAATGTGCAACTTTAGGGGTTGGCGTTCCC 91776 29 100.0 32 ............................. CTACCAACCGCGCTCCATCAGCTTCCCAGAGC 91837 29 100.0 32 ............................. CAAGCCCCGCCGCCGCAACAAGTACGAATCAT 91898 29 100.0 32 ............................. CACCGCACAGAACACCCTCGACCATGTGATCC 91959 29 100.0 32 ............................. GACCCGTTGTTAATATCCGCGACGGGGGTTGG 92020 29 100.0 32 ............................. TGGTTGCGAGGAATTCCATCTTGGAGCACTTC 92081 29 100.0 32 ............................. GTCTCATCTTCACCTTCCCAGGTGATATTCGC 92142 29 96.6 32 ............................G GGCAGCCCTCCAACCAGGTTTCCGGATCAATA 92203 29 100.0 32 ............................. GCCTACCGAGGCACGCGGGAGGAATTGCGTGC 92264 29 100.0 32 ............................. ACCGCCGCCCACGCTACGCGATGAGGTGGCGA 92325 29 100.0 32 ............................. ACGGGCCTGCAGCTCACCCTTCAGCGCTTCGG 92386 29 100.0 32 ............................. CCCGGCTTGCTTAAGCACCGCGATAGCTTCGG 92447 29 100.0 32 ............................. GAGTGAGATGGAAGTCGATTCGCTCACGTCCA 92508 29 100.0 32 ............................. CGATAACCTCCTGCGCCCGATTCCACAAGTTC 92569 29 100.0 34 ............................. CGAGTGGAGATGGAAGTCGATTCGCTCACGTCCA 92632 29 100.0 33 ............................. CGATAACCGTCCTGCGCCCGATTCCACAAGTTC 92694 29 100.0 32 ............................. CGGAGGAAGGGGATGATGACTACCACGACGGA 92755 29 100.0 32 ............................. CACCCGCAAGGCCAAAATCAGTACCCCAGTGG 92816 29 96.6 32 ............................G ACTCGGCAGGATTAGAGTCCAGGAGCCGAGCC 92877 29 100.0 32 ............................. ACCCGTGGCGAACGCAATAAGCGTGATAGAGC 92938 29 96.6 32 ............................T TCGCCGCGCCAGGTGAGGCGGCAAAGGAACTA 92999 29 100.0 32 ............................. GAGTGTGACCAATGCCTAACGCTTTTATTTGT 93060 29 100.0 32 ............................. GTGATTGTGCCTCCAATAGTCACAAATTTGGA 93121 29 96.6 32 ............................T TGGCGCAGTGACGACCGCGCGCTCGACCTCGC 93182 29 96.6 31 ............................T GGTAGGACTGCGTCAGCTCGGTAGCTTCTTG 93242 29 100.0 32 ............................. TTGGAGGTATCCCCATCCATGGCATTCAACGC 93303 29 100.0 32 ............................. AGGGCGCGTAGTTGGTCTCGCGTGCCTCGGTA 93364 29 100.0 32 ............................. ACGCCCACCTCCCTACCGGTCTACACTGGCCC 93425 29 100.0 32 ............................. CTAAAGCATTTCGACTGGTATATAGACGGGTG 93486 29 96.6 32 ............................T CAAAGGCAGCGCATCCTGCGACTCACCACGCT 93547 29 96.6 32 ............................T GGTGCGGTGTCGTTTGAGGTGTTGCCTGGGCC 93608 29 96.6 32 ............................G CCTTAGAATCCGCGGCTTTGACCTGGCGCAAC 93669 29 96.6 31 ............................A GATTGCGCTTACACGTCGGCTAGCTGAGGCG 93729 29 100.0 32 ............................. GGCGGCCTTATCGATACTAAGGGTAAGACTCA 93790 29 100.0 32 ............................. ACGTCACGCGGCATAAAGCCTATTTCGTCCAA 93851 29 96.6 33 ............................G TGCACGGTTTGCCACGCGGCATGGGGCTAGTAG 93913 29 100.0 32 ............................. TTCCACCCGTAATAAGGTAGCGGGCTAGTCTC 93974 29 96.6 32 ............................G CCGGAGACCCGCGTAGCTGGCGTGCCGCCGCT 94035 29 93.1 0 ......................A....G. | ========== ====== ====== ====== ============================= ================================== ================== 52 29 98.9 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGCCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : CTTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGGGATAAGATTTTTCTGTTAAGAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTTAAAATCGGACCACACGGTCCCTACATCCTCATCACAAGATGCGAGCAATCCTCATTTACGCTTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACGTTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCTAGATCTTGAATTGAGTCACCGAGCGCTGCGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 192003-195631 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGGG01000006.1 Corynebacterium striatum strain 2038 Contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 192003 29 100.0 32 ............................. GCTGACCCGCAAACCATCATCATCAACCCCGA 192064 29 100.0 32 ............................. CTATGTGGGATGTCTTTGAACTCTGGTACGAG 192125 29 100.0 32 ............................. AAGCAAAAGAGTTGAGAAAGTCAGCTTTCCTA 192186 29 100.0 32 ............................. TAGGAGACATAAATGTCTGTCGCAAGTTTTGT 192247 29 100.0 32 ............................. CAGCCACAGGAGTCATACAGGCCGGGGTGTGG 192308 29 100.0 32 ............................. TAGCAGGCAAGCAATTCTTCGATACGGATAAA 192369 29 100.0 32 ............................. ACTACTTGTCTGCGGAGCACGACCCGGCAAGT 192430 29 100.0 32 ............................. CTGGCTGGACACCCAATTAACCGCTAGTGACC 192491 29 96.6 32 ............................A CAGGGCGGAAGAGCAGGGGCTGAAACTCGTCA 192552 29 100.0 32 ............................. TTATGGGCATGCTGCAAACGTTACAGGAATCG 192613 29 100.0 32 ............................. CGTGGCCGGTGGTAATGCTTTCACTAGCGCCC 192674 29 100.0 32 ............................. TTTACGGGCATAAATCGTACCTGCGCGATAAT 192735 29 100.0 32 ............................. AGAACTTAGAGATTCTGCCCGCGGATTCTGGA 192796 29 100.0 32 ............................. CCCTACTACAAGGAAGCACACCGCGTGTTTAC 192857 29 100.0 32 ............................. CTGACGCCGGACTCCGCGCCTCGCCAGGATAA 192918 29 100.0 32 ............................. ACAATTAGTACATCATGTGCCCTAGTGGGAGA 192979 29 100.0 32 ............................. CTAGCCGCCTATCTGCACAATCAGGGCGTGTG 193040 29 100.0 32 ............................. CCTGGTTCATTCTTATATTTAGGAGACTCACA 193101 29 100.0 32 ............................. CAGATGGAGCTGGCGTTACAGAAGAAGCTGCG 193162 29 100.0 32 ............................. TACGACGCATCACTCACCCTCACCGAAATCAC 193223 29 100.0 32 ............................. GCGGCGCGGCCTGCCAGTGAGAAGTGATAGCC 193284 29 100.0 32 ............................. CATTGTGGTATCAAGCTTTGCATGCCCTAGCA 193345 29 100.0 32 ............................. GGCGATAATGTCGCCGCGCACGCGGGCCTGAA 193406 29 100.0 32 ............................. CATGACACGGCCACCCCTAGGTGGATAGGTCC 193467 29 100.0 32 ............................. TATTCCTCTTCCCTCATGGGTGGTCCCACACG 193528 29 100.0 32 ............................. CACAGCCCTCACTCATCGCCCACGAACTCGGC 193589 29 100.0 32 ............................. GTATTTGTTTGCCATGATTTCTCCATTCTTGC 193650 29 100.0 32 ............................. CTCTCTGGAAAGCCCGAGCCTGTGCTCACCGG 193711 29 100.0 32 ............................. TATTCGTATCGTCGCGCTGTAAGAACCTTATC 193772 29 100.0 32 ............................. CATCATCGCACTGGGTATCGACTACGGCACCA 193833 29 100.0 32 ............................. ATCGGCCGGGTGAAGCTGTATCGCGACCACTC 193894 29 100.0 32 ............................. ATCGCCCGCACCTACCTTGACCAGATGGATGA 193955 29 100.0 32 ............................. ATAAGCCACCGCGGTTTATGTGCTGATTAGGT 194016 29 100.0 33 ............................. AATCATTGCATTGCTGGTAAACATCCTTGTGCA 194078 29 100.0 32 ............................. GAGTTCATGCCGTGGGCTGCATACCCGACGGG 194139 29 100.0 32 ............................. TATCACGGTCAGGGCCTCGCGGTGGACTTTTC 194200 29 96.6 32 ............................T AACTATGCCTAAGACCCTCGCAGACATGACCC 194261 29 100.0 32 ............................. TAACACAATCGAAGTACCCATCTCGCTAATCA 194322 29 100.0 32 ............................. ATGACCGCACCTGCACAGGAACCCATGCTCGA 194383 29 100.0 32 ............................. TATCAAGCCCGTGGACGGAGTACGCATTTCCC 194444 29 100.0 32 ............................. GCCGCCTCACGAGTGACATCGTTCGTATCAAA 194505 29 100.0 32 ............................. ATTTACAACGCGTCCAACCGACTACTACGCCA 194566 29 100.0 32 ............................. TGGACCCACTAGCCGATTTGGCAGAAACCCTG 194627 29 100.0 32 ............................. TTTCGCCGAGCGAGTTTGCCCGCGCCTACGGG 194688 29 100.0 32 ............................. ACCTTCATAAAGGTGCATTCCGGGGTGCCCGG 194749 29 100.0 32 ............................. TATTCGTATCGTCGCGCTGTAAGAACCTTATC 194810 29 100.0 32 ............................. CATCATCGCACTGGGTATCGACTACGGCACCA 194871 29 100.0 32 ............................. ATCGGCCGGGTGAAGCTGTATCGCGACCACTC 194932 29 100.0 32 ............................. ATCGCCCGCACCTACCTTGACCAGATGGATGA 194993 29 100.0 32 ............................. ATAAGCCACCGCGGTTTATGTGCTGATTAGGT 195054 29 100.0 32 ............................. ACCCCAATGTCGGCGCACGAAACGACGGAGCG 195115 29 100.0 32 ............................. TTGGCGCGCCTCGTCTCAGGGGCTACTAGCCC 195176 29 100.0 32 ............................. ACCCGTGCGCCGAAACCGCCACGGCGGGCAAG 195237 29 100.0 32 ............................. GCGGTACGCACCGCCGTATCCAAGGTGGACGG 195298 29 100.0 32 ............................. AAGGTTCAGGCCGCCGGTGATTTCCAAGGCCC 195359 29 100.0 32 ............................. TTCGCCAACTGCGGCGCGGCCTTAGCCAAAGA 195420 29 100.0 32 ............................. GGTTAAACGCCCGCGAGCTTTGCCTCGTCCTG 195481 29 100.0 32 ............................. AGGGGGCCAGGGCGCCGCGCCGTGGTGAGCTA 195542 29 100.0 32 ............................. TAAGCCTCACCTAACTCAGTGCTACCGCCTCC 195603 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.8 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : TAAGGAAGCAACTACGCCGGGAGATCCATCGGAAGAACTTACTCGTCGACATGCTGGAAGTTCTCACAGAGGTACTCACGCCCCACTTACCTTCACGTGATGACGATCGACTCGTCTCTGGGCGCGGCGATGAAGTCGCCGGACACACACAATATGGACGGCGCTGAATGTTTCTTGTAATCACAACCACCAGCCTCCCAGACCACATGCATGGCTACCTTTCGCGTTTCCTTTCGGAAGTAGATACCGGTGTTTATGTAGGAAACGTTTCCCGTCGCGTCCGCGATAACCTGTGGCGACGGCTTTCCAATGCCATCGCCGACGGCAGCCTAACCATGATCAACGAGGACCGGACCCGCGAACAGGGCTTTGCAGTCAACACTATGGGACCGCGACGCCGTACAATCATTGACATGGACGGCCTTTTACTTGCGTGCACGTTTTCGCGAGAACATACGCAAAACCGCACCGAGACAAACTAAAGTTGCTGTTCAGGAAGT # Right flank : TTTTTAACGCTTCGCTTGGGTTCAGACCGTCGTTGCACCACTTCTAGTACGGAGGTGTTGTTATGGCACAGCGTCCGCAGGGCACTTTTGTGTCGTTATCGGAGTCGGATAAGGAGCAGTTGCGGCGGTTAATTGCCGGTGGCTTGAGTCTGCGCGCAGCGGTGCAAGAGGTTGGGTGTAATTATCAGCATGCGTATTTCTTTGCCCATTGTGAGCAGTTGATTCCATATAGTCCGCGTGGTCATGATGCTCAGGCTCTTGCGGCGGGCATCGAACTGGTGAGAAAGGGTGTGCGTGTGCATACCGCGGCGCGTCAGGTTGGTGTCTCTGATCCAGTTTTGCGCCGCCAGGCGTGCAAGCTAGGTTTGTGCGTGCCGGTCAGTCAGCTGCAACGGCGGATTAATGCCACCGAGCAACGTGTTATTTTCCTGCGTCTGCGACTAGCGAGCTTGTCGACTCGTGATGCTGCTGTAGCTTGTGGTATCAGTTTCCGTAAGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //