Array 1 317415-315191 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBA01000014.1 Nocardiopsis ganjiahuensis DSM 45031 contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 317414 29 100.0 32 ............................. TACACCGACAGCTTCCCTGCGGGGAGCCGGGT 317353 29 100.0 32 ............................. CAGCTGGACGCGATCGAGCAGCAGGCCACCGA 317292 28 96.6 32 .................-........... GTTTTCGGCTGATAATGAGCGTGACTATTCGG 317232 29 100.0 32 ............................. CCCTTCCAAGAACATATATTCAGTCTGTTTTG 317171 29 100.0 32 ............................. ACCCGGGTGGCACTCAGCGCCCTCCAGCGCGA 317110 29 100.0 32 ............................. ACGTGCTCACGCTGCCGATCCGCTCCGCCGCG 317049 29 100.0 32 ............................. GTCGCGTTCCTGATCACGCTCACCACCACCTC 316988 29 100.0 32 ............................. CCGAGAAGCTGACTGACCCCGGGTTCGATGTC 316927 29 100.0 32 ............................. CAGGACATCGTGTCGGTGGACTGCCTGTACGG 316866 29 100.0 32 ............................. CTGGAAGAGATCCAGGCCCGCATCGTGGCGAC 316805 29 100.0 32 ............................. GAGTCCGAGGAGGTTGAGCCCTGCCCAGATGC 316744 29 100.0 32 ............................. CAGACCGACCCCCGGCCCCGCTGGGTGGCGGG 316683 29 100.0 32 ............................. TACTGGGGTTCGTCGGCGGTGGCGGGGTCGGC 316622 29 100.0 32 ............................. AGTGCGTTCCGCCGATCGTCCAGCGTCACGAT 316561 29 100.0 32 ............................. CCCGCTCTCATCGCGATCGTCGCCGTCGTCAT 316500 29 100.0 32 ............................. GATCCTCCTAGGAGGTGGGCCTCACGCGGCCG 316439 29 100.0 32 ............................. TGCCCCCGGTGCGGCCCCCTCCAGCGGCTGCG 316378 29 100.0 32 ............................. CCGGACCTGCGGACCTGACCGGCCACCAGGTC 316317 29 96.6 32 ................T............ GATCGGGGCCACACACATGCGTGGGATTAGGC 316256 29 100.0 32 ............................. TGCTGGTGTTTAACCTGATCATGGGTGGTTAA 316195 29 100.0 32 ............................. CAGCGTGTCCGGTACGTGCCGCTGCCGGACAC 316134 29 100.0 32 ............................. ACGGAGAGCGGGGGCCCGTCTCCCCACACGCG 316073 29 100.0 32 ............................. CAGCGTGTCCGGTACGTGCCGCTGCCGGACAC 316012 29 96.6 32 ...A......................... ACGGAGAGCGGGGGCCCGTCTCCCCCCACGCG 315951 29 96.6 32 ........................T.... GGGTAGGGCGGCTCGTAACCATCCCGGGGGGC 315890 29 100.0 32 ............................. TTCGAGGTCGAGCAGCTGTTCGAGCGGGTCCT 315829 29 100.0 32 ............................. ACCGAAACCGAACGCCGCCACTCCGGTGCGGA 315768 29 100.0 32 ............................. GCCGCCGCGGTTCTTCGCGGTGTGAAGGTGGT 315707 29 96.6 32 ..................A.......... TACCTCCTCGGGTCCGGGGCGGTCCACTGGAG 315646 29 100.0 32 ............................. TCGCGGTGATTGGGTTCGCGGTCGCTGAGGTC 315585 29 96.6 32 .........................A... TGGACGTTCAGGGTGCACACGTACTCGTGGAT 315524 29 96.6 32 .............A............... TCCACACAGCGGGCGTAGTGCATCTGCGCCTG 315463 29 100.0 32 ............................. GAGACCCCCTGACATGGCCCTGCTATCTGCTG 315402 29 96.6 32 ..........T.................. TGGGGGCCGGGTGACCAGTGGGCACCGGTCCG 315341 29 96.6 32 .........A................... TCGTCGGGGGCGATGGCGACCTCGGCGAACCT 315280 29 100.0 32 ............................. TCCTTCCCCGTGTCCCGTGCGATCCCGGACGC 315219 29 93.1 0 .......................A....A | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.0 32 GTCTTCCCCGCGCGAGCGGGGGTGAGCCG # Left flank : TCGGCGCTCTGGCTATCCACGAAGGGCGGCTCACCCCCGCTCGCGCGGGGAAGACGCACGCGGGCAGGGCCCCTCCCACGAGCGGGACGGCTCACCTCCGCTCGCGCGGGGAAGACCCCATGCCGGTGATTCCGGGCATTCTGGTGTCGGCTCACCCCCGCTCGCGCGGGGAAGACGCCGCCACGTCGCTCCGGTGGCAAATGAGTGGGTACGGGACTGGCAATCCTTGACTTTTGCCCCATATTCGAGCATTTGGGAAACTATCCACCTATTTGACCCGTAGTCGGAGATGGTGGCTGCTAGCCATGTCTCCGGTCAGAGTTAGCATGAGAGGCTGACATTCCAGAGCAAGCATTCTCAAGCCAAGGCACAGGGCTCCGAGAACAGAAGCCCACAGGGCGAGATCGCGCAGATGAACCAAAGACAGGACTTCCCGCACCTTGAGGCCACGTCAGGTCACAAAATGACAACGTCCCACTAAAGGGCCAGGTCGGGAAGTG # Right flank : GCGAACTCAGGTGACAGCCAGTGGATGGTGCGGTGTTTGTCGATGACCTGTGAGTACTGACCCGTAGAGCCGTCCACAGTGTCGCCCCCGCTCATGTGCTTCCACAGCCTCACATAGCCGCCATATTCCAGGATCGCTGCGGGTGACCGGCGGGCAGGCTTTGGTGCACTCCCGGCCCCGTGAGGACGTTCACTCTGAGAGGGTCGCTTCGGTACGGCGTCCGTGCACCTGACCACCGGTCTCCGTCATGTTTTTGACAGTCTGCTGTGCGTCCCCTGGAAGTACCTGCGGTCGTAGAGGCCGCGTTCCTTCACCAACCGACCCCAGCGCTCCTTGCGACCGAAGCGTTCACCGATCTTCTTCCCGTCGGGCAGCTTCCCCTGGTCCCGCTCCCACTCCTCAGCCCACGCCCATGCTCGGGCCTGAAACGGTGTGAACGGCTTGGGGGCCTTGTCCTGCCCCGACGGATCCACTAGGCGCAGGCCGCTTCCCAGAGACGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 317739-317888 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBA01000014.1 Nocardiopsis ganjiahuensis DSM 45031 contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 317739 29 100.0 31 ............................. ACACCAGAATGCCCGGAATCACCGGCATGGG 317799 29 96.6 32 ...................A......... TCCCGCTCGTGGGAGGGGCCCTGCCCGCGTGC 317860 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTCTTCCCCGCGCGAGCGGGGGTGAGCCG # Left flank : AGTCACGCTCATTATCAGCCGAAAACCGGCTCACCCCGCTCGCGCGGGGAAGACTCGGTGGCCTGCTGCTCGATCGCGTCCAGCTGCGGCTCACCCCCGCTCGCGCGGGGAAGACACCCGGCTCCCCGCAGGGAAGCTGTCGGTGTACGGCTCACCCCCGCTCGCGCGGGGAAGACCACTTCCCGACCTGGCCCTTTAGTGGGACGTTGTCATTTTGTGACCTGACGTGGCCTCAAGGTGCGGGAAGTCCTGTCTTTGGTTCATCTGCGCGATCTCGCCCTGTGGGCTTCTGTTCTCGGAGCCCTGTGCCTTGGCTTGAGAATGCTTGCTCTGGAATGTCAGCCTCTCATGCTAACTCTGACCGGAGACATGGCTAGCAGCCACCATCTCCGACTACGGGTCAAATAGGTGGATAGTTTCCCAAATGCTCGAATATGGGGCAAAAGTCAAGGATTGCCAGTCCCGTACCCACTCATTTGCCACCGGAGCGACGTGGCGGC # Right flank : GCCCTTCGTGGATAGCCAGAGCGCCGATGTGCCGGGCCAGAGCTGTATCCCTCGCCCGAGGGTGAGTTCGGCGTGCACCCGCCGCACCCCGTAGACGCCGTTGGATGCGGCGTGGATCTGGCGGATGGTGTCGGTGAGCAGCACATGCCGGATGGATCGGGTCGAGGGCCCTCGATCACGCCAGGCGTAGAACCCGGACTCAGACACCCCCAGCACCCGGACGGCGGCCTGGACCGGATGTCCCTCGGCGGCCATCACCGCGATCGCCTCGAACCGTCTTTGGGGGCACCACCTTCCCCAGCAGCTCACGGGCCCGGCGGTGGGTCGCCAGTTCAGCCCCCAGCTCGGCGATGCGCTTGTTCGCCGTTGCCAGCTCGGTCTTCTCGGTGCTGGTCAGGCCCGGAGCCAGACCTCGGTCAATGCGGTCCTGGCGCCGCCAGGCGTAGATCGTCTCGGTGCTGATGTCCAGATCGCGTGCCACGTCCGCGATGCTGCGTCCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5222-6775 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBA01000024.1 Nocardiopsis ganjiahuensis DSM 45031 contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5222 29 100.0 31 ............................. CTGATCATCACGACCCGGCAGGGGAGCACCG 5282 29 100.0 32 ............................. CCGTGCGCGAGTCGATGGCGGCGCTGGAGCAG 5343 29 100.0 32 ............................. AAACGGCTCCCCCCGACACGACGTTTCCCCGT 5404 29 100.0 32 ............................. CTGGCATACGGAGAGGTCTCCCCGGGGGAGCG 5465 29 100.0 32 ............................. CGGCTGTTCGCGTGGTCTGAGGATTGGCAGCA 5526 29 100.0 32 ............................. TTCGGCAGGATCCCCGCGCTGATCCTGTTCGT 5587 29 100.0 32 ............................. CTCATCATCGCCGGGTACGGCGGTGCGACCAC 5648 29 100.0 32 ............................. TACAGCACCGAGCTGGTGCCCCTCGGTGGCGC 5709 29 100.0 32 ............................. AATGGCTCTGCCATTCTTTATCCGAGTCGCCT 5770 29 100.0 32 ............................. CATCTACGTCCGAGGCCATTCTCCGGACACCG 5831 29 100.0 32 ............................. GGCGGGTGGGCCACCAAGGGAGCCGGCAGCAC 5892 29 100.0 32 ............................. ACCTGGCGCCGCGCGCCGACGATCCGACGCGC 5953 29 100.0 32 ............................. GCGCTGTTCTGGCCCGGTGCTGCTCACCCGGT 6014 29 100.0 32 ............................. GCGCTGTGGATCGAGGAGGGTACTCGCCCGCA 6075 29 96.6 33 ............................A GTCGGCGCGGGTGCCGCCGGTGACGTCGATGTC 6137 29 100.0 32 ............................. CGGATCATCCGGGCCCACCCCGACGCGGTCCT 6198 29 100.0 32 ............................. CAGCAGGTTGAGCGGCAGGGGCGTGTGCCGCG 6259 29 100.0 32 ............................. GAGCTGGACCGCCGAGAGGAGCGGGCCGCCCG 6320 29 100.0 32 ............................. GGGCACCGGGGCGCGAAACGGCGTCTGACCTG 6381 29 100.0 32 ............................. TCCCTCGGCCAGGGCGATGATGCCGAGGATGG 6442 29 100.0 32 ............................. GGGGCGTCGTGGTGGGTCAGGGTCCAGTGAGT 6503 29 100.0 32 ............................. ATCGTGGAGCTGTCCAACCGCTCCCGAGGAGT 6564 29 100.0 32 ............................. GCCGGCGAGCACGCGGTAGAACGCCAGATCCT 6625 29 100.0 32 ............................. GACGGGTCAGAGCGGCGCATCGACGTGCCCCC 6686 29 100.0 32 ............................. GACGACTGGAACCGCGTGGCCCAGCTCCGCCA 6747 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GGCAGCCTGTGGAACTGATCGAGTGCCGTGCCCTCGTCGTCGACGGTCGCGGCCTTGTAGCGGTTGTCCAGAGCTTTGATCTGTGGGGTCCAGATCTGGACGATGTGTTCGTCCAACAAGAGCCATGCCTCGTGCAACCAGGTCCGGGAGTAGAGATCGTTGGTGTATTCGTAGATGTCGTCGTCATAGCCGAGCTCGATCGCGGAGACGAGAGCAGCCCACGCGGTCACCCTGTCGGAAACCGTGAACGCCGTCCGCCAGCCTCGTTGGTGCAGCAGCTTTCCGACCTCGATTTCAGTAGCCACGAGCGTGAGGTTCTCATACGGGGATTCGTTCAGGCGACCGTGAGGTCGTTTGCTGTGGTGGAGTATGTAAGACGAAGCTGACGCTCTGAGGTTTGGGTGCGGGGCGGGTCGTGGATTGGGGGGCGTTGAATCAGCTCCCTACTGCCGAGTAGGTCTCTCGGAGATAACGCCTTGCGTTTTCGCAGGTCATTAACT # Right flank : GGTGGCACCCAGCTGTGGGTGGACACCCCGGAAGTGAGCCCCACGCACGGATGGACCCAGGCCCGCCCCCGGAGCCGTCGTCGACCGCCGGGAGCTTCGGGCCTTCCTGGCTATTTCTCAGCGGGGGTTCCCCAGGATGAACGGACGAGGTGGGCAGGATCCGTTCTGGATCACCGCGTAGAACCGGAGCAGCCCTACGCCACGGGCGCACCGTAGACCAGTGCGGCACCGGCGCATAGCGGTGACGATTTTCTCTGCCCTGGTCAGAGCCTGCCCGTGCTTCACGCGGGCAGGCTCCCGTTTGCACAGCATCAACGTGCCTGAAGACAGGGGCACCACCGGCCCTGAGAATGCTTACCTACCGCTGCTCACCGCGTCGCGAACTGCCGGACGAACCACTGGGTGAGAACCCCGTCGACCGCCGCCGTCGCGGGCAACTGGGGAGCTGGTTCCAACCCAGGCTCATCGGCCAGCGAGTGGGCCAAGCCCGGCACCGTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 33075-33592 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBA01000028.1 Nocardiopsis ganjiahuensis DSM 45031 contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 33075 30 96.7 31 ............................T. TCAGTGGTAGTGGTCGCCGCTCTGCTGATGG 33136 30 96.7 31 .............................C CCCACTACGGCCCCCGCCACCACGGCGGGGG 33197 30 100.0 31 .............................. AGGTCGCCGAAGGCCGGCGCACCTCCAAGGC 33258 30 100.0 31 .............................. GCGCGTCTTCACGTTCTAGAAGGTGCTCGAG 33319 30 96.7 31 .............................T TCTTCGCCGCTGACGAGGACTCGGTAATTCC 33380 30 100.0 31 .............................. CCAGATCGGCCGAGTCGGAGCGCACCCGGAA 33441 30 100.0 31 .............................. CAACGACAAGGAGGGCGGCGACAAGAAGGCG 33502 30 96.7 31 .............................C ACCAGTCACCCCCCGTACTTTCCGGATAGTT 33563 30 96.7 0 ..............G............... | ========== ====== ====== ====== ============================== =============================== ================== 9 30 98.2 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CGGAAACCGGCTGTTTCCGGCAAGGATCGGTAATGCTGTGCCAAGGGTTGCCATGTGGGGCGATGCGGACGGCGTGGCGTACGCGCAGGTCATCCGGCCGGGGTGAGTATGGGCAGCGGGCCGCGGGGGAGTTACCGAAGGTGACCCAGCTCCTCCCGCGGGCCGACCCTCCTCACCCGAACCCACCGCGTGGCCGCCCACTGGCCCAAATTTCAAGGCCGCGCGGTGTTTGCTCCGAACGGCGCCCGTGCCCCGGCACGGGCGCCGTTCGCGTTCACCCGAGGGTCTCGCGCGGGGTCCGGCAGTGAGAGGACAGCGTGCTCTCCAGGCCTGGGGGAGGGGTGTTCCTCGGCGCCTTCTTTTTCCTGGCAAGGGAGCAGTAGGTTGGGGTTGAAGGTTGATTGAGGGTGACCATTTTGGGTGATTTGTCTTCGGTGTCCGAGTGTCAACAACGTGCAGATTTTGGCCTCTTGGCGATCTAGACCCGCAGGTCACCGAGA # Right flank : GGGTACAGGTGAGGGAGCGTGCCTGCAGACTCTTCTTCAGGGTTGAGGAACATCGGAACAGGATCCGGCGCTTAGCGCGGGTTTCCGTTCCGATGTTCCTCAACCCCTGACACGTAGGCGTGGTCGACCGTCGGTCGAACTGGTCGACACGGCCCCGGCTGTGGGGTCAACGGGGACGTCCCTTGCGCTTGTGCTTTGACTTTCGGTAAGCGTCCAGGGCCTTCCGCGAGCTCTGCCATGTTCCATCGCGGCTCTGGAAGGCCTCCAACCGTCCGCGCTGCGCGGCCTGACGCAACGCGGCCAGCGAGAACTCCTCATTGACGAGCGCGGCGAGCGGGACCATGCGTGCGGGCCCCGCCACGTTGGGCACGATGAACCGTTCAAGGTTGTCGATCATCGCACGCGCGATCAACTCCCCCAACGAACCAGGGTCCCCGGCATCGGCTCGTTCCATCGCGGTCAGGTACGTGGGGCGCTGCCGCTTGAGGATGATGACCGGG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 241989-243603 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBA01000018.1 Nocardiopsis ganjiahuensis DSM 45031 contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 241989 29 100.0 32 ............................. TCATGCTGACCGTCTTGATCTTGCTCGGGTCG 242050 29 100.0 32 ............................. TCGAGGTTGTAGTTCTCCACGAAAACCCCGGT 242111 29 100.0 32 ............................. GAGCCTGCCCGGTGTGCCCGTGGTGCCGTTCA 242172 29 100.0 32 ............................. GCAGCGGGGGCAGTGGCCGGGGGTTGCGATGG 242233 29 100.0 32 ............................. GTGGTGTCGCCGGTGCCGATGATCTTCTCCAG 242294 29 100.0 32 ............................. TCGCCATCGCGGCGGAGCGACTGTTCCCCGCC 242355 29 100.0 32 ............................. CGCCACCTGCGCGCCCTGCGAGGCGGTGACGC 242416 29 100.0 32 ............................. GCGTGCCGGGGCCGCCGGATGGGCATCCGTTG 242477 29 100.0 32 ............................. AGAACGCCCTCCGCCTGCGTGCGGACGCCCTC 242538 29 100.0 32 ............................. CGGCCAGGCCGGCGCGCGCGTAGGGGTGGCCG 242599 29 100.0 32 ............................. CGAAGTACGCCGCCGGAGACACCCGCTCCCCC 242660 29 100.0 32 ............................. CAGCTCGCCTGTGGATAACCCTGTGGACAACG 242721 29 100.0 32 ............................. GACGCTAGCAGCCGAAACGCCGTAATTGCAGG 242782 29 100.0 32 ............................. CGGGGCATTCCAACGATCTGGCTCACTGTGAG 242843 29 100.0 32 ............................. GACCAGTCCGATTTCTACGTCAAGGGACGTCA 242904 29 100.0 32 ............................. GCCTCACGATCTTCGCGCAGGCCATCAGCGCG 242965 29 100.0 32 ............................. CTGCTCACCGGCGCTGTCACCGAGTACAACCC 243026 29 100.0 32 ............................. TACGGCGGGTACGTGTACCAGTCGGACCCGCG 243087 29 100.0 32 ............................. GGGAGACCTGGCCGAAGAACCGGACCGCTGAA 243148 29 100.0 32 ............................. TCGGCCACCGGTGACCCGCAGGAATGGCTAGA 243209 29 100.0 32 ............................. AGCAGGGTCACGCCCGATCACCCCTGAGGGAG 243270 29 100.0 32 ............................. CGCACGCAACCGTCGGCGAGGTGGCCGCGTGA 243331 29 100.0 32 ............................. CCCTCCCCGGCGAGTCCGCCCAGGAGCTGGCC 243392 29 100.0 32 ............................. GTCTCCGGATGCGCGCGCCCGGACGGCACAGC 243453 29 100.0 32 ............................. ACGGCAGCGTCCATGATCCTGTTGGCACGCAG 243514 29 100.0 32 ............................. CGGTTGTACTTCCACACGATCACTTCGCGGGC 243575 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CCCAGCTCGCGGTCGCCCCGTACTCGGTCCGGGCCAGGCCCGGGGCTCCGGTGGCCACCCCGGTGACCTGGGAGGAACTGGACCAGCTCACCTCATCGCAGGACTTCACGATCGACCTGGAACGGGAGGAGTGCCCGTTCTCGGGGATGCGCAGGCACGCGAGGTCACCCCGGCGGGCGCTGTCCCTGCTGGACGACAGGGAGGGTGGCGTGGTGCCGCGCCCCCGCCTCGAACAGGGGGAGTAGGGCGGTGCCGGTCCCGGCGGAGCGAGGAGTGGTGTCCGCTGGGTGAGGGCGAGGGCTGGCTCTGGCAGCGGGCGGGTCGGGGACGCGGGCCGCGGGATCCGGACATCGCGAGTACGGTACAGATCAGCGAGGGCATGAGGGCTCGGGGTCTGAGCCCTGGAGTGCACGGGCGCGCTCGTGCGATCCTGAGGGAAGCGCTGAGCCGAGTGCAGGTCTCGCGGAGATAACGGCTTCTGTTTGCCCAGGTCATTAACT # Right flank : GAATACTGACTGCTTCGACCGGTACTACGTGACGTGAGCCGCGCGGGGACACCCTGACCGGGACCTTGTCGGAGCGGTTTCTTCAGTGTTTGCGGAGGACGATGAGGAGGTTCCAGGTGATGACCTCGCGCAGGAGGGGCACGTGGACGACGGGTTTCGTCCAGGTGGGCAGGTAGCGGGGGCGTAGGTCCACGATGTCGGTGTCCGCCTGCTCGTGGGCCCAGCGGATCATTTCCTTGGCGTGTGCCGCGTACATGGTGCGGCCGAAGTCGTTCTTGGGTCGGCGGCCGTTCCTGCGGGTGAACCGTTCGGCGGCGTAGGACCCGCCCAGATAGTGCCAGGGGGAGGTCTCGTGCCCTCCCCAGGGGGAGAGCCAGAGCGTGTAGGACAGGTAGACGAGGCCGCCGGGGCGGGTCACGCGGACCATCTCGTCGGCCATCCGGGTCCGGTCGGGCACGTGCTCCAGGACGTTGGAGGAGAAGCACACGTCCACGGACCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 284833-286935 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBA01000007.1 Nocardiopsis ganjiahuensis DSM 45031 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 284833 29 96.6 32 ............................C GCGCCCGCTCGGGGTCCATCGTGTGCCGGTTC 284894 29 100.0 32 ............................. ACCGGTGATCGCAGATACCTGCGCACATCCGC 284955 29 100.0 32 ............................. GGCCGGGAGTGGAGTCCCGGCCCGCAGTCATC 285016 29 100.0 32 ............................. GACGTGCGCGGCCAGCTGGACACCGTGGCCGC 285077 29 100.0 32 ............................. ATCTCGGTGCGCCGCATGGTGTTGCTGGTGGT 285138 29 100.0 32 ............................. GCCCAACGGCCCCAGGCCCCGACGAGTCGACC 285199 29 100.0 32 ............................. TGGCATGTCCATGACAAATTGGAATGAGTGGG 285260 29 100.0 32 ............................. CCAACGCCTCATGACCTCTCGCCCGATCGGCT 285321 29 100.0 32 ............................. GTGGCGTTGGGGTCGGCTTTGAGTATCTGGTA 285382 29 100.0 32 ............................. AGCCAGGGTGTGGGAGCGGTAGCGCGCGGCCA 285443 29 100.0 32 ............................. CACGTCTCCGTCGTCGTTCTCCTCCAGGCCCT 285504 29 100.0 32 ............................. CACCGGCCTCGCGGGCGGCCGTGATCCGGTCG 285565 29 100.0 32 ............................. GCCGACACCGATTCCGCCTGGGTCCAGCCCTA 285626 29 100.0 32 ............................. GAGCATCGAGCGGGCGATGATGCTGGTGGAGG 285687 29 96.6 32 ............................C ACGGCGGGGTCGGGGCGGCGGCCGCCGCGTCC 285748 29 100.0 33 ............................. TACGCCAGCGACGGATCACCCCCGGCCAGACCC 285810 29 100.0 32 ............................. GAGACGCGCTTGATGACCTCGCCGCCCGTCGC 285871 29 96.6 32 ............................T GCCCCGTACCGTCTCGTGACTGCTGACCACCG 285932 29 100.0 32 ............................. GCGCTGCCACTGGAACCGGCCCTCGGAGAACA 285993 29 100.0 32 ............................. AACCGGCACACGATGGACCCCGAGCGGGCGCG 286054 29 100.0 32 ............................. GCACCACCCGAGTGCAGGTGTGGCCCGTCGCC 286115 29 100.0 32 ............................. GACTTCTTCGGGTTCTCCGCGAACACGCTCGT 286176 29 100.0 32 ............................. GAGATCCCGGCGAACCTCTCCCTGTGAGTCCG 286237 29 100.0 31 ............................. GCCCGCTTCGCGCTCATCATCGCGCCCATCG 286297 29 100.0 32 ............................. TACACGACCGGCCGCGCCGGGGACCTCGCCCA 286358 29 100.0 32 ............................. GGGGGAGGGTCATGACCACCACCCAAACCGAA 286419 29 100.0 32 ............................. GCCGCTACAGCGGCGCCTGGTCGCGCCAGCGG 286480 29 100.0 32 ............................. GTGTCCCTGTCCGCCCAGGACGCGGAGCTGAT 286541 29 100.0 32 ............................. GGCATGGGCGCCATCAGCGGCAACGTCTACGT 286602 29 96.6 32 .......G..................... GGCATGGGCGCCATCAGCGGCAACGTCTACGT 286663 29 100.0 32 ............................. ATCCGCCGCGTCAAGGAGCTGCACGCCCAGGG 286724 29 100.0 32 ............................. GAGCCGTTCGAGCTCGACCTCGACGACGAACG 286785 29 100.0 32 ............................. AGCAAGGGAGCGCGCGCTGTGACGGACCGCTA 286846 29 100.0 32 ............................. AAGAAGACCAGCCCCACGCCCAAGCGCGACCA 286907 29 93.1 0 .........C...G............... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : TCAACGCCCTCGCCAGTACCTGGGGCAGCGAGCCCACCCGCAACGGCCCCGCCGTCTACTTCACCCTCGACTGGGAGCCCTCGGAACCGTCGCCCAAACCCCGGCCTCTGACCGCTTTCACCCGCTTGCCCCACCGGCAGGGATGAGCATGGTCGGTTACAGCGTCTTCCCCAGTCACGAGATCCAGCAGCTCCGCAAGGAGTTCCCGCACCACCTGATCTGCGAACTCCACAACCACCACGGCCAGCCGGTGTTCGTGGCGACCCTGCTCCGCCGTAGCTGCCCGTGCCCGCCGGACCTAGTCACCGCGTCCACGCCCACTGCTCTGCGCGAGGCCCTCGCCTCCATCCGTTGACAGCAAGGGCCGGGCAGCATTACCCCTGTCCGGCCTACTACGGCCCTCTATCATGTGATTCAGTGCAGGATCGAGGTCTCGGAAACCGTGGCCTGAGGCTAGGTTGCGGCAAGATAACGGCCCGCATCGTTGCAGGTCGTTAAGT # Right flank : GCGTTACGGGAAAGCGAGCCTTGGTCTGCCAGAGTGAGCCTTGCGGACAGGCGACCCCGGTCGAAGCACGTTGAGGTTCATTCGCGAAGGTGGTGCGATACGGAAGCGGCGGTGGTTGCAGATGCCTCAGGTTGCGGAGTGCTTTGCCCTGGATCTCGTCGAGAGATTTCCACTGCTCGGGCAGAACATCGATTTCTACTACGACGGCCCGGAGGACTTTCTCGCGCACGTGTTCTTCGGGATTGAAGTGACCCCCGAGGTTGTCGCTGCATATGTCGCGGAGGTCAGCGGTGTACCGGTCGAGGAAAGGCTCAACTGGCGTGGAGTGCTCAGTTTCCTCAACCGCTGCCTGCAGTCCGAAGACAGGGTCATGAGGACCGTGATCGGCACGTCCTTCCTGTTTCAGCTTCCCGCGCCCGGCCAGGAAGGCTATGGCATCGTGGACGAGCTGGACGACGGGCTGGCGCGACTCTTTGAGGTGGCAAGGCCGAACGGCTGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 279696-275820 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBA01000009.1 Nocardiopsis ganjiahuensis DSM 45031 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 279695 30 96.7 31 .............................A GCGCCAGCCCGCGCGCGACCTCCGCCCATGC 279634 30 96.7 31 .............................G TCATGGCGGTCACTGGGCGCCCTCGGTGGGG 279573 30 96.7 31 .............................A TCCCCGACGACGCCACGACGTGCCCCGACTG 279512 30 96.7 31 .............................G GCCGGATGGGGTCAGCGCTGACCCAGAGCTG 279451 30 96.7 31 .............................G TCCAGGGCGACGCTCTGGCTCGACTCAGGGC 279390 30 100.0 31 .............................. TGGCCGTGGTCTGGTCGAAGCCGCTGTTCTC 279329 30 96.7 31 .............................G CGAAGGTCTACCGTCGCCTGTGCGAGGAGCT 279268 30 96.7 31 .............................G TTGGTGTGGAGCGGAAGGCGGGGGGTGTTGG 279207 30 93.3 31 ............................AT GGCGTTGTACAGGTCGTCGATGCCGCGGAAG 279146 30 100.0 31 .............................. TCGCCTACGACTTCACCGTCCTTGACCGCAA 279085 30 96.7 31 .............................A TCCGCCCGGCATAGGGGTTGATGACGTTGGA 279024 30 100.0 31 .............................. TTGGCCGTTTTCGACCGGTCGGTCTGACCTG 278963 30 100.0 31 .............................. ATCGCTTGTACTTCGCGAAGCTTCGCGAAGA 278902 30 96.7 31 .............................A CGGCCGAGAAGGACCGGCACGGCATGACACC 278841 30 96.7 31 .............................G CCTACATCTGGCAGGCCGCCCTCATCTCCGG 278780 30 96.7 31 .............................T CGACGGCCAGGACCTCGGTGCCGAGCAGGCA 278719 30 96.7 31 ............................T. GCGGGGACGGCCGCTGTCCTAGCCGCCCTCG 278658 30 100.0 31 .............................. GACGCGCCGTCCAACTCCGGCATAGGGGCCT 278597 30 100.0 31 .............................. GCGTAAATCACCCGCGTCCCCCTGCACTGCT 278536 30 96.7 31 .............................G AGGTTGTCCGCGTGCTGGATCACCAACCACT 278475 30 96.7 31 .............................A GAGCAACCGAGCGGGCCGAGTCATCACACAG 278414 30 100.0 31 .............................. GGGCGTCGGCGTAGACGTAGAACTCGTCTTC 278353 30 100.0 31 .............................. GGGCCACACACCGGTCTCCATGCAGCGCTTG 278292 30 100.0 31 .............................. TGCGGGACGCCCTGCTGGTCCTGGACGGCCG 278231 30 100.0 32 .............................. GCTCAGCGCTGAGAGTCCCCAGCTTGCGGGCA 278169 30 96.7 31 .............................T CCCAGGCGATCTCTCCACCGGGGGTGGTGGT 278108 30 96.7 31 .............................A AGCCCAAAAGCAGCAGCGAGAAGAGCAGCAG 278047 30 96.7 31 .............................G GGTCTCTGAGCCAGCCGTGGGTGGACGTCTG 277986 30 96.7 31 .............................G TGTACCTGGTCGTGGGGCTGGTGGCGGCTGC 277925 30 96.7 31 .............................T CGGCGAAAAGCACCGTATCCAACGTAGTCAA 277864 30 96.7 31 .............................G TGGGCGAGTTGGTCGCGACGTTGGATGTCGA 277803 30 100.0 31 .............................. GGACCGGTGGGAGCTGATCCGGGACCGGTTG 277742 30 96.7 31 .............................A GTCCCGGAACCTGGCCCGGGACGCCCGTGTG 277681 30 100.0 31 .............................. CGAACGGCGCGTGCACGTGCCGTTGGCCGGC 277620 30 96.7 31 .............................A GGCCCGGCTCGACGGGTGGCGCGCCCCGAAC 277559 30 96.7 31 .............................A GGCCCGGCTCGACGGGTGGCGCGCCCCGAAC 277498 30 96.7 31 .............................G TCGCCCGGGTCCGGTCTTCGGGAGATCGTCA 277437 30 96.7 31 .............................G GGATGGCAGGCCAGTACGCCGACAGGAACGC 277376 30 100.0 31 .............................. GGGCTGAGGAAGTCTCGGCCGCGCTGGTCCG 277315 30 100.0 31 .............................. CGGAGGCGGGCCCCGACGCTGCACGCGGAGT 277254 30 96.7 31 .............................G CACCCGAAGCAGCCAGTCCTGGACGGTGGCC 277193 30 96.7 31 .............................G AGGCGCGGGCGCAGGCCCGCAAGGACTCCCA 277132 30 100.0 31 .............................. TCACAGACACGCTGGTCGGTGACGTAGGCGA 277071 30 96.7 32 .............................G CGCTCCTCGCGTCTCTGCGGGCGGCCGGGTAC 277009 30 93.3 31 ......................C......T ACCCGCAGGTCGCCATGTGGCTCGCCGAGCA 276948 30 96.7 31 .............................A CCAGCCGGTAGCTGGCGACCTCGTGATCCTC 276887 30 96.7 31 .............................A CCACCCATGGCGGGCCGGGGCACCGGGTCAC 276826 30 96.7 31 .............................T GCTGAAACGCCGTGTCCGCGCGGGTGATGTC 276765 30 96.7 31 .............................A GCGCCATGGGAGCGAAGGCGGCCGCGATGAT 276704 30 100.0 31 .............................. TCGACGCCGAGTGCAGCGGCTTCCCTTTCGT 276643 30 100.0 31 .............................. ACCAGTGGCTCCAGGCGGTGAACCCCAGCGC 276582 30 100.0 31 .............................. AGCAATTGACCGACTCCCCCGGAGGACTCAT 276521 30 93.3 31 .....................T.......T CACGGCCGCCGTCCTGCCACCGCTTGAGGGC 276460 30 93.3 31 .....................T.......G GTCTCGGCCTGGACGACCTGGCCGCCGTGGT 276399 30 93.3 31 .....................T.......A GGCAGAGGGGATCTCGGGTCGTGATCTGCGG 276338 30 93.3 31 .....................T.......A CGGAACCGGTCTGGGACGCGTTCGTGTTCCG 276277 30 93.3 31 .....................T.......G CCTATGTCCCGTGTGGACCAGGGTAAACGGG 276216 30 93.3 31 .....................T.......A GCTGGCGCCGCTGGGCGCCCCTGTCCACGGA 276155 30 96.7 31 .....................T........ GCACGTCCACGCTCCGGCCGGACTGGTCGGA 276094 30 96.7 31 .....................T........ GGACGTCCACCTCCTGGGGCAAGGGCCCGAC 276033 30 93.3 31 .....................T.......G CCACGACGAAGCCATCCGCCCCACCCGACAC 275972 30 96.7 31 .............................A GGCCACCGAACACTTCCAGGCCGAGCGCACC A [275969] 275910 30 93.3 31 ...T.........................G GCCGAATCAAGAGCGACGAGGAAAGCCCCGA 275849 30 90.0 0 ..A.........................GG | ========== ====== ====== ====== ============================== ================================ ================== 64 30 97.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : CGGAGACCAGTTGCTGGAGGCTGGACGGCACCACCCGGACGAGGTGGTGTGGTGACCGTCATCGTGCTTGCCAAGTGCCCCAAGGGGCTGAGGGGATTTCTCAGCCGCTGGCTGATGGAGATCTCGACGGGGGTTTTCATCGGGAACCCCTCCCGAAGGGTCAGGGAGGCGTTGTGGGCCGAGGTCCAGGAGTACGCGAACAACGGTCGCGCCCTGCTGGTGTACGGAAACGATTCAGAGCAGGGATTCGCCTTCGAGACCTTCGAGCACGACTGGGAACCGAAGGACCACGAAGGATTGGTTCTGATGCATCGTCCCAAGAAGCCCGCCAGCAGGCGCTCGAGTGTTGCCAAGACCGGTTGGAGCAAGGCTTCCAAACGGCGCAGGTTTGGAAAGCGGTGAGCGATATGGTGCCTATGGGTTGCATGTGTCTAATGTCCAACTTTCGAGAAGTTGGAAAAATCGCTGCTTGCCACTGGTAAGTTGCCAGGTCAAAAAGT # Right flank : ATCCCTGCCCGAGGCGAGGCTGGTCGGGCTGCCTCTTCCCCGGCCGTTCCCTGCACCCCCGCAGCCTCGCTCGCAGGCTCACCGCGTTGGGTATCGAGGTTCGGTCGGCGCGTAACAGTGCTCTGCTGGATTACGTACGCCAGCTCCCACCCACGGTGATCGGCCAACTACTCGGATTCTCCCCAACAACGATGGAGCGATGGGCGACGCTGTCCGGGGGTAAGTGGGCACGCTACAGCCCTTCCCTTCCCGCCCCCTTGGCCCACCGTTCTCCATCCTGAAGCAGGTTCATGCTCGTCAGTAGGTCACGGTGAGCGGTTCGGGCTCCCCCTGATGGATCTCCCAAGAGTCTCGGGTCATCTCGATGATCAGACCGGATCCGGTCGGGTCTGCCTCGGGTACCCCAGCTAGGTATCCCGGCATGACCGCCTGTTCGCCCGGCTGCCATGCCAGCGAGACATACGACTCCATGTCGGGCTGGTCGGTGCATGTGGTGCCCG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 290620-289980 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBA01000009.1 Nocardiopsis ganjiahuensis DSM 45031 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 290619 30 100.0 31 .............................. AAACAGAACGATATGACGGAACGAAACGGAA 290558 30 96.7 31 .............................A TGAACGACGCCCTCGTCCAAGCCCTCACCCG 290497 30 100.0 31 .............................. CCCCGGCACCTGGGACACCTGGGCAGAGCAC 290436 30 93.3 31 ...........................T.T ACCAGGAGGTTGCCTACTGGATCTCGGAGAA 290375 30 100.0 31 .............................. CACCCGCCATGACCAGCGCAGCCACCCCCCG 290314 30 100.0 32 .............................. GAACACTCCCTGATGGCCTGGTTCAAGGTCGA 290252 30 96.7 31 .............................C ACAGGTACGCGGCACGTGTCGCGTCATGGTC 290191 30 100.0 31 .............................. GGTTCGAGCCCTACCCGCCCACCCCGAACGG 290130 30 100.0 31 .............................. GGATCCACACCAAGATCGAACGGTACGGAGC 290069 30 93.3 31 .......................A.....C AGCGGGTGTACTCGTCCGTTTTGGCGCGCAG 290008 29 73.3 0 A.A....T........T.A.....-.T..T | ========== ====== ====== ====== ============================== ================================ ================== 11 30 95.8 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : AAGCGTTCTGATGATGGGCGTTGGGTGCCGCCTGGCGGGGTTCTCGAGCTTGGCGAAACTCCCGAGGAATGTGCTGTTCGTGAGGTGCGTGAGGAAACCGGTGTGGAGGTCAAACCGCTCCGGCTGACCGGGGTCTACAAGAACATGAAGCTTGGCGTGGTCTCTCTGGCCTTCTTCTGTGAACCTGTGGGTGGTCAAGCTCAAGCCAGCTCCGAAGCCATGGCAGTAGCCTGGATGACTCCAAGCGAGGCCCTCTCTGCGGCTCCCGAGGCCCGTGGAATTCGCATAACGGATGCCCTGAGCGAGGGCGGACCGTTCGTTAGGGCTCACGATGGTACGCACCTGTGTCCACCTCATCTGCTGGTGAATCGCGACGGCTGAGCTCGCAAAGGAAACTGAAGGGGTTTTGGGTGATTTTGCAACTTTTGTCTTTGATGTCTGGCTCTCAACAACGTGCAGATTCCAGCATCTTTGCTCCTTAAAACTGCAGGTCATTGAGA # Right flank : GCTGAGATGAACGCAGGGCCGGAAGCTGGTTCAGCAGAAGCCTTGAACTGTTAGCTGATCAGCCTATCGAAGACAAGAAAAGCGATGGATGAGGGCATCACTCCGGAAGCGGCTGCTGCTGCAGGAGATTCTCCTGCTGCCCAGCAGAGGCCGCAAACCAGGACGAAGACGAAGAGGGAGAGTGCAAGGATGAAGGCGGTTCGCAAGGGGATGCGGTCCCTTGCAGGGGTGGGAGGGGCGGCCTGGGGGGTCATGTAGCTCCTTGAGAGATGTTGGCTTGTTCATCTCTTGTAGCTGATGTGTTCGATATTTTTCTCGGATGTGGATACGATAACGTGTTGTGACCGCTCCTGCACCCTTCCCTGCTAAACGCAGGGATGGCCCCACATCGGCTACGAGCGGTACATGCTCCCCGCGCACGCGGGGATGGCCCCCGCATGCGTACAACGCCATCGACTACCTCGACCACTCCTTGCGCATGCGGGGTCAATATCCTTCTT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 297300-295798 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBA01000009.1 Nocardiopsis ganjiahuensis DSM 45031 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 297299 30 93.3 31 .........A...................G GCGGACCGATCGGGCTGAAGGGCAAGCCCCA 297238 30 93.3 31 .........A...................C GGCGTGAGTTTCAGGTCGGTCACATCCGGGG 297177 30 96.7 31 .........A.................... CCGCCGCGTAGATGAAGGTGACGGCCATCAG 297116 30 96.7 31 .............................G CCACCACTACGGGGTCGACATGCTCGATTTC 297055 30 96.7 31 .............................T TCGAGGCGGTAGATCTGACGGGCTGTGAGGC 296994 30 96.7 31 .............................G TGATCGCGCCTGCGTTCAAGGCGATCGGCGC 296933 30 100.0 38 .............................. CGCCGCCGCTGGCCCTGGACGAGGTCCGGGACCACCTG 296865 30 96.7 31 .............................C AAACCCCCCGGGGGCCCTGGCCACCCCACCG 296804 30 100.0 31 .............................. CGGGACGAACGCGGGGTGCCCGTCCGGGTAG 296743 30 96.7 31 .....T........................ CGTCCGGGTTGGTCACCCTGTGGCCCTCTTC 296682 30 96.7 31 .............................T TGTAGGACGTGCCCCTCTTCAGCCCGCTGTG 296621 30 96.7 31 .............................C CGCTCACGGATCTGCTCCACCCGGTGGGTGA 296560 30 96.7 31 .............................G TTGACCCCGACCCAGCGAACGGGTCCACGAC 296499 30 96.7 31 .............................T GGTTCACCATCGTGGCGCGGTCAAGGCCGCC 296438 30 96.7 31 .............................C ACGCGCGAAAGCCCATTAACTGGGTAATCAA 296377 30 96.7 32 .............................G AGCTGGCACCGCACTGCCCGGTGTCCGAATCG 296315 30 100.0 31 .............................. AGGCGATCTGACATGCAGATCGGCTCAGAGT 296254 30 100.0 31 .............................. GGCGGCGGATGTGCTCGTCGCCGGGCAGCTG 296193 30 96.7 31 .............................G TGCCGCTCGCGGGCGCCGTCCCGGCGCGCGG 296132 30 100.0 31 .............................. CGCAACGGGGGCGCCCGCCGGGCATGGCGGG 296071 30 93.3 31 ..T..........................C GGGCGGTGCCGACCGTGTAGGAGCGCAGCTC 296010 30 93.3 31 ..T..........................G GCAACGCCCCCGAGGACGACGACCCCGACGG 295949 30 93.3 31 ..T..........................G CGCACGGGGCAGGCCGCGCACAGCGAGACCA 295888 30 100.0 31 .............................. AGGAGGCCTGATATGCCGGTCCTGTTCGACA 295827 29 93.3 0 ......T...............-....... | G [295802] ========== ====== ====== ====== ============================== ====================================== ================== 25 30 96.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : GGTGCCGGCACCATCGCCGAACTCACCGCCCTGGGCAAGGCCGCGGTCTTCATCCCCCTGGCCTCCTCCGCCGGCAACGAGCAGGCCCACAACGCCCGCCACCTCCAGGAGTCGGGAGCGGCCATCGCCCTCCTCGGCGAGGTCAACCCGCAGAACCTCCAAGCAGCGGTCGAGCCCCTGCTCGCTGACGCGGCCACCCGCGACGCCATCGCCGAGAACGCCCGTTCCCACGGCCGCCCGGACGCCGCCGAGCGCCTGGTGGACGTGCTGCTCACCGCTGCTGGCTAGCGGTAGGGGCGGGAGAGCAGATAGGCAGAGGAGGGCCGCCCGGGAGGGCGGCTCTTTTCAGATGTCCCCTGAGTAAGTTCTACTGTTGGGATGGCAGGACGGTCGAAGTAGTGATTTTTCATGGTCTTTTGGGTGATTTGTTCTTGGTGTCCAAGTTTCAACAACTTGCAGATTTGAGGGGTCTCGCTCCACAAACTCGCAGGTGAACAAGA # Right flank : TCTCCGCACACCTCGCCAGCCTCGCTGTCCCACCGGCCACCCAAGTGAAACCGGCAGCCGCATCCGATCCTCAGGCTGAGGTCAGGGCATCGATGAAATGACGTTCGCCGCTTCGTCCAACCAGACGGTCTGCTGGTCCACGGACACGGTCATACCGAACCGGTCGATGGCGGGGCTGCCGGAGTCGAGCCACCACTGATAGGCCGCCTCGAACTCCGCGAACAGGTTCCGGGGCCCGTAGTGGCGAACCTCGTGGGAGGTCGAGCCCGGTTCTACGTGCCAGGAAGCCCAGGAACCGCTGTCGGGATCGACCAGGTGCACGACGAACTGCTGGTCGTCGCCGCTCTCGGGGAACTCGATCGTGTTGATCACGGTGGACATGTGCAGCCCGATCGCGAAGCTCGCGTCGAACGCCAACGGAGCGTTCGGTTCCATGCCGGTGCGTCTGGCCCTGAACTCGTGCTCGTCGCTGACGAAGGTCGCCACCGCTTGGCCGAGGG # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //