Array 1 6204-5240 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MJSP01000016.1 Listeria monocytogenes strain CFSAN002265 PROKKA_contig000016, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
      6203	    36	 100.0	    30	....................................	ATTTTTTCATTCCAAACTCCTTCCACAAAC 	
      6137	    36	 100.0	    30	....................................	CTTAATAGCGGATTGATTGGTAGCGATGTA 	
      6071	    36	 100.0	    30	....................................	TGACCTTTTGTTTTCATTTCCGAGTCAATA 	
      6005	    36	 100.0	    30	....................................	ATAATGTCGACACGTCCGATAGATCGAATA 	
      5939	    36	 100.0	    30	....................................	CAATATTGGTAATAACTATGGCATTCCCAT 	
      5873	    36	 100.0	    30	....................................	AAAAGTACTAAAGTCACCAAAATAGAAAAC 	
      5807	    36	 100.0	    30	....................................	TAATTATTGATGAATTCCCGGTCAATTGTT 	
      5741	    36	 100.0	    30	....................................	TCCGCACCTTCAATTTAATTTTAAAGGTTA 	
      5675	    36	 100.0	    31	....................................	TGCTAGGTTACTCAGAAGCTTACACATTCGA	
      5608	    36	 100.0	    30	....................................	ATTTCTGCTTGGATTGATTGCGGATTTTCT 	
      5542	    36	 100.0	    30	....................................	GTAAGTAAAACCGGACGACTCGATGTGTCG 	
      5476	    36	 100.0	    30	....................................	AAAAGGGGTGTGCTTGAAATGGGTGTCTCC 	
      5410	    36	 100.0	    30	....................................	AAAATCGGCGATACCCTAACCTACTTCGGT 	
      5344	    36	 100.0	    30	....................................	AGACAAAAAAGGCGAGGTACATTGGACGAA 	
      5278	    36	  86.1	     0	.............A.....C.....A.A.......G	|                              	C,A,T [5243,5246,5251]
==========	======	======	======	====================================	===============================	==================
        15	    36	  99.1	    30	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                               	       

# Left flank :   ACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATCCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAGG
# Right flank :  ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.80,-1.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//