Array 1 2723-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFU01000023.1 Clostridium sp. D2Q-14 992-12986-1805255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2722 30 100.0 37 .............................. TTTTATCACCTTATCCGCTTCCTCTGCTTTTGTATAA 2655 30 100.0 37 .............................. TTAACACCAAACTGGCCACGTCTTGCTATTCTATATA 2588 30 100.0 36 .............................. AAATATTTATTTAAGCAAATTCTCTCGAACTGTGCA 2522 30 100.0 38 .............................. TTACATCATCTAATAATGTAGCGAATACATGCTCACAT 2454 30 100.0 37 .............................. ATATTTGAGCTAGAAGTACTTCAACCGATAACTTTTG 2387 30 100.0 37 .............................. ATCTAAGAAAACAAGAGCGAAAAGAAATTATTTTCGC 2320 30 100.0 36 .............................. CAAAGAATGAGTATGAAGAGAAGCTTCAAAATCAAG 2254 30 100.0 36 .............................. TTATCTTGTCGATTTGTTCATCTGTTAATCCTAGTG 2188 30 100.0 37 .............................. AAAGATAAAAATAATTTATTAAAAGAAATACTAGAAA 2121 30 100.0 37 .............................. GTATATATCATAAGGATTCAAAGGGTATTTAATTCTA 2054 30 100.0 37 .............................. AAAGAAGAAATAGAATAAAAAGGAGTGTTAATATGAA 1987 30 100.0 36 .............................. GAAGGAGTAGCAGGAGGAATCGATAAGAATTCCAAA 1921 30 100.0 36 .............................. GAATAATAACTTGCAGTATGTGTAAAAGAAAAATGA 1855 30 100.0 36 .............................. TGCTTTTAAGGCTTCAATCAAACCTTCCTCCACTAA 1789 30 100.0 37 .............................. TTTTCAATTCTTAAAGCCTTAGCAATGGAATTTATCA 1722 30 100.0 36 .............................. AATTCCATATACAGATTATTAGCTTTTAGGTACTTA 1656 30 100.0 37 .............................. GCACAAGATTATATGTTTAGTGATGCGATAATGTATA 1589 30 100.0 37 .............................. GGCAATGTGGATTACAACAGGGTTTCTTATATAGCAA 1522 30 100.0 37 .............................. AGATAATTGTGTTGGACTTGTCTTTAAAGTCTTTTAA 1455 30 100.0 36 .............................. GAATAATAAAATACTAAAAAAACATAAGATAGATGC 1389 30 100.0 37 .............................. TTATATTCTACTACTACTCTATCATTCTTTATTTGAG 1322 30 100.0 36 .............................. ATTTTTACTTTGTCTGGTATATTCAAATAACCACCT 1256 30 100.0 37 .............................. ACTTCTAAAGTAGCTAAATTTTCATATGTTTTACCTA 1189 30 100.0 36 .............................. TCAACTTCATATAAATTTACTATTTCCCCTGTTTCT 1123 30 100.0 37 .............................. ACTATTCGCGATTATCGTTTACAAGGAATTATAACAC 1056 30 100.0 35 .............................. AAGCTTGTATCTGCAAAAGCAAGTGGGCTTGCTGA 991 30 100.0 36 .............................. TTCTAAAAGTTTTTTTGATAAGTCGAATATAAATAA 925 30 100.0 36 .............................. ATTTTTTATTTATAGGAGGATAGAGGGAATATCTCA 859 30 100.0 36 .............................. TCTATAGATAGATTGAATCCTAGTTCTTTTAGATCG 793 30 100.0 36 .............................. ATTATTGTATGTTGGTCTGTTCTCTGTCCAGTTTCC 727 30 100.0 36 .............................. GGTGCACTTATAGTTAATGCAAAAACGGAAGCTAAG 661 30 100.0 36 .............................. TTATAATAATAATCCCTTGATTTATTATAAAGCTCA 595 30 100.0 37 .............................. GTATGATACAGTGACGCCACTATCAAGTATAAAATCT 528 30 100.0 37 .............................. TTTTTTGAATCACAAGTTTTTCATTTTGAATTACATG 461 30 100.0 35 .............................. ATTTTCAGCAACAGTTGTGTCTGTTAATTCATCAA 396 30 100.0 37 .............................. TAATACCCCCTCCATTTTTGTATTGTTATATGTATTA 329 30 100.0 38 .............................. TTGTTTCCAGGTGATGAAAACTTAAAAGCTTTACCTCC 261 30 100.0 35 .............................. TATTTACAAACCAAGTTGTAAAGCAAACTAAGGAG 196 30 100.0 36 .............................. GCAAATACACATTGTCTTTTTAAGTATGAGCTTCTT 130 30 100.0 37 .............................. AGAGAAAATGAGTTTGGTGAAATAGAGAATGAACTAC 63 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 41 30 100.0 36 CTTTTAATAGAACCATAATGGAATGTAAAC # Left flank : AATACTCTGGATTTAAGATATGGTGGTGATGTACTATGTATATTATCTTAATGTATGATATACTAGCAGATGAGAATGGATCAAGAATTTCAAGAAATGTCTTTAAAATATGTAAGAAGTATTTAACACATATACAAAAATCTGTATTTGAGGGTAATCTAACAGAGATAAATTATATGAAATTAAAAAGTGAGCTAGATACTTATATTAGAAAAGATAAAGATTCATTGTTGGTTTTTAAAAGTAGACATGAGAGATGGTTAGAAAAAGATTATTTAGGTGTAGTTGATGATAAAACATCAAATTTTTTTTGAATTACTCTCTGTCGATGTGTAATAGCGTAAAAACCATTGGACATTGACAATTAATGTTATTCAGTATATTTTGCTTAAATACATACTGGATAATTCAATAAAAATAATCTCGTGGAACTAGTCAAATTTCAAATAGACAGAAATATTGTATTGAAACAAGTATTTGCAATGATTACATAGAAACGC # Right flank : CCTATATATTAACATAGCAGAAATAAAAAAGGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATAGAACCATAATGGAATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2210-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFU01000047.1 Clostridium sp. D2Q-14 938-2242-301553, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2209 30 100.0 38 .............................. CATCAATTGACAGATTACACAGAAATAGAAGATTTAAT 2141 30 100.0 37 .............................. AAGGTTTCCCGTTCTTTCCATGTACTCCATAAGTTCC 2074 30 100.0 38 .............................. AAAAACAAAAAGTAGCGATATATACAGGGATTTCGACT 2006 30 100.0 37 .............................. TCTTTTTTAACTACTGCTTCTTTTGCTACATCTATAA 1939 30 100.0 35 .............................. GACTATGAACCCGAACCAACATATAGTGATATTGG 1874 30 100.0 36 .............................. ATGGTACCACTGCATTTCTTGATCCTATTTTTATAT 1808 30 100.0 37 .............................. TTTCCCCACTGGATGTATCTATTAAAGTAATTGTACA 1741 30 100.0 37 .............................. ATCCTTGCGAGTTTGGTCGGTCGACGAATTTCGTCAC 1674 30 100.0 37 .............................. GAAGAAAAGGAGAGATGTTAACGTGGAAAATTATTTA 1607 30 100.0 39 .............................. TAAATCCTATACCACAATACAAAAATGGGAAATGGGTAC 1538 30 100.0 36 .............................. ACACTCATGTAGATGGAATTATAAGTGGTCAATACC 1472 30 100.0 38 .............................. TAAAAAACAGAAAGGAAATAGACCCTTGTATTAGTTAT 1404 30 100.0 37 .............................. TTTCTTTTATTGTTGCTGCAATAGTTTTAATTGTTTC 1337 30 100.0 38 .............................. TAAAACAATAATATTTTGCATGTATACTCATGAAATCA 1269 30 100.0 36 .............................. TGGATTTGGCATTACAGAAGAAGCAGAAAAGGCTAT 1203 30 100.0 36 .............................. AAGCTATATTTTCTTTATTTAAATATTTTATCACTA 1137 30 96.7 38 .............................T GGCATAGACCCAATCATAACCTTGCTGTATAGATTTAC 1069 30 100.0 37 .............................. CTATCTAAAGGATTTCCAGTATTGATGGATGAAGAAA 1002 30 100.0 36 .............................. GGTGCAAATAAATAAAGAAAAATATAAATTTATTTT 936 30 100.0 36 .............................. GTCGACAGTGGTATGAGTGATACCTGGATAGCTAAG 870 30 100.0 38 .............................. TTAGATTTATTATCAGAGGTTTCTTCATCATATTCTTC 802 30 100.0 36 .............................. TGTTGTTTTCTACGATTATAATACATAAGTCCTTGA 736 30 100.0 37 .............................. AGTATTATTACATTATATTATATAATATTAATAAAGG 669 30 100.0 36 .............................. ATTTTCAAATTTAAAACTTTATCCAGTGCTATAATT 603 30 100.0 38 .............................. TTGAGGAAAATAGAGATGAGATAGTGGAGAAGGCAAAA 535 30 100.0 38 .............................. GAAGAAGTAAAAGAAGGTGAAGGTTACGGATGTACCAT 467 30 100.0 37 .............................. CAACAAGAATTGACGAAAAATTGCTAAAGAAAATAAA 400 30 100.0 38 .............................. AGAAATGGGAACATGATTAATTCAGAGATAAAAATAGA 332 30 100.0 36 .............................. TTAAAATCTGATGATTTTATTAAACAATCTGATATA 266 30 100.0 38 .............................. ACTCCCATTATACTAACCCCAATTCATAATGATGAAGC 198 30 100.0 38 .............................. GTAAGTAATAATATTCATATTCGTTTTCTATAGTGAAT 130 30 100.0 37 .............................. GCTTTTTGAAATACTTCATTTATAACTTTTTCATTTT 63 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 33 30 99.9 37 GTTGATATACTACCTATGAGGAATTGAAAC # Left flank : AATATGAAGATTTAAAGGAGGGATAACGGTGA # Right flank : CTAACTAGCCATCCTTTATATTTTCCTTTAAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATATACTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 1162-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFU01000094.1 Clostridium sp. D2Q-14 374-12844-1711811, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1161 30 100.0 36 .............................. ATTTTAAACGGAACTCCTATAAGTAGAAATGAAAAA 1095 30 100.0 35 .............................. GCTGATGAAAATGATTTAGAAATCTACATCAAAGA 1030 30 100.0 36 .............................. TGTAACTCAAGCAGAATATGATGCTTTACCACAAGA 964 30 100.0 38 .............................. ATATTTTTACTTCTAGCTCTGCATTTTTTATTTCTTCC 896 30 100.0 37 .............................. TAATTGTAGTAGGTTTTCATGTGCTCGTACCAATCAG 829 30 100.0 35 .............................. TGGGTTGGAGGTAGTACCCAAATAAAAACACTTTG 764 30 100.0 38 .............................. ACATATCTCCCTAATGGCACAGTAGTTGTACCTCACGA 696 30 100.0 37 .............................. CAATTTAAATTCTTGTTAATCCATTTTGTTATGTCTT 629 30 100.0 37 .............................. TTACAGAGATCAGAGGGGACACTTGTAGATGGAATTA 562 30 100.0 36 .............................. GTACTTCTTTTTCATCCTCTAGATTAACGGTATAAA 496 30 100.0 37 .............................. TTGATTTGTCACAGGTGATTTTGATTTTTAAATCAAA 429 30 100.0 36 .............................. TTGTATCCAGTTTCCTATGGATATATGTCAAGAAAA 363 30 100.0 37 .............................. ATATTTCTTGTCCTGCTTTCAGGTATTCTGTTTCATC 296 30 100.0 37 .............................. GAAAATACGATATAAAATATATGGCTAAAAATTCAGA 229 30 100.0 36 .............................. TTTTCTGGACTTCAAAACGTTATAAGTGGATTAAAA 163 30 100.0 39 .............................. GCAATCTACTCCCATTTACCATAGCAGTTTCATAACTAC 94 30 100.0 37 .............................. GAAGAATATGAAGATTTAAAGGAGGGATAACGGTGAG 27 27 90.0 0 ...........................--- | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 99.4 37 GTTGATATACTACCTATGAGGAATTGAAAC # Left flank : GGTGAAAAAAACTATGATCCATATATATCTAGGTGGTAGAGATGTTTGTTATATTAGTATATGATATAGGAGAAAAAAGAGTAGCAAAAGTACTTAAAACCTGTAGAAGATATCTTCATTGGGTACAAAACTCAGTATTTGAAGGAAATATATCGGAAGCAAATTTAGCAAAATTAAAATTAGAACTAAACAAAATTATTAAAGATGATAAGGATTCTGTTATAATATATTCTTTTAGAACTACTAAATATTCTTCAATAGAAATTATGGGTGTTAAAAAAGGTGGAGAAGAAAATTTCTTTTAAGATAAATTGTCGTCGACCTCCAGTAAAGTAAAAACCTCTGGAGACCGACGACAATTTTGTTTTATGAATAAAGATAAGGATTTCAATAACATTACTATTATAGAAGGAGATTTGATTTTAGTATAGAATATATATGAATGAGGATATTTTAAATTACGTCAAATTAACAATGAGTAAATACCTGTGTTTTAATGG # Right flank : A # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATATACTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 10455-10032 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFU01000094.1 Clostridium sp. D2Q-14 374-12844-1711811, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 10454 29 100.0 37 ............................. CATTCAGGAACTACTTCGTTTTTATCTTCTAGAGTCC 10388 29 100.0 37 ............................. CAGGTATATCTATATCCAGATATATATCTCCTGCATT 10322 29 100.0 38 ............................. CTGATGTATAGTGGAGACACCTTCAATGCTTTAGATAA 10255 29 100.0 38 ............................. CAATTGAAAAACTTAATGGTTCATTAGAGGAGAAAGAT 10188 29 100.0 33 ............................. TAAATGAAATATACGAGAATGGGAAAAAAGAGA 10126 29 93.1 38 ....................A.......T TTTTTACAATTTTGTCCTAGTACATCAATATCCACACC 10059 28 79.3 0 ...A...........G.....T-..G.T. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 96.1 37 CTTTTAATAGAACCATAATGGAATGTAAA # Left flank : CGATTTAACTTATGTAAGAGTAGATAACAAGTGGAATTATGTATGTATTTTAATCGATCTATATAATAGAGAAATAATAGGTCATAGTGTAGGTAAATATAAAGATGCAAACCTAGTATATAGGGCTTTTTCAAGTGTATCTACCCGATTAGATAATATCACTCTTTTTCATACAGATAGAGGAAATGAATTTAAAAATAAAATAATTGATGAAGTATTAGACACCTTTAATATAAAGAGATCATTGAGTATGAAAGGATGTCCTTATGATAATGCTGTTGCAGGGGCAACATTTAAAATATTTAAAACTGAATTTGCTAAAAATTATCATTTTGAAAGTTTACAGCAGTTAGAAATAATGTTATTAGACTATATTAATTGGTTTAATAATTTTAGAATACATTCAACTCTAGGATATCTTAGCCCTAGAGATTATAAATTACATAACCTTAAAAAAACTGTCTAAATAACTGTTGACAATCCAAGATGTGTCTAATGTA # Right flank : TATGTTATTAAATAATTTTATTTTTATGGAAGGAAATTTAGATTTAATATAGAATATATATTAATTCATAGTATTCAAGGTATATAAAAAGAGAAATGGCTATATACCTATATTTGAATGGATTGATATAGTATCTATAAGGAATTGAAACCTAGAACTTACTCAGGTAAGTTCTTTTTTAATGTCCTTATTGATATAGTACCTATAAGAAATTGAAATTGACATAAATGGACAAAAATATTCAAAATATTTTGAAGGAGTTTTGGTTTTTGTCTAGAATTGAATAATAAAGACGTAATATAAATTTAACTTCAAGGGGGATAAAAATGAGAATTAAACTTAAAATGACCTTTACTAAATTAAATTTACCAATTAACTATAATAGTATTATTCAAGGTTTTATTTATAATAATATTTCTGATGAAAAGTTTAGAAAATTTCTTCATGATAAAGGATTTAAATATGAAAAGAGGAACTTCAAATTATTTACATTTAGCAGA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATAGAACCATAATGGAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 11716-12812 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFU01000094.1 Clostridium sp. D2Q-14 374-12844-1711811, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 11716 30 100.0 37 .............................. ATGTCAGTACATCACAAATTACAGATAAAACAACTAT 11783 30 100.0 36 .............................. AAGTGAAAATATATATAATAAATACTGTATATAGAT 11849 30 100.0 37 .............................. CTACAGTATCTTTTATATTACTAACAATTTCTTCTAT 11916 30 100.0 37 .............................. AATGATGATCTTGATGATTTATCTATACTTCTTCTTA 11983 30 100.0 36 .............................. TTTAAACATTTATACATTTCAATCACTCCCACGACC 12049 30 100.0 37 .............................. GTATCGCTTGATGATAAGTAGGCTGCAACCTCTATCA 12116 30 100.0 38 .............................. TAAACTTTAGGAGGGATTATTTTGTATAAATTACAAGT 12184 30 100.0 37 .............................. GGTATAGACCTACCTCGCATAAAAATGGAAGTAGACA 12251 30 100.0 36 .............................. TGTCATATCATAATACACTGTTTCATATGTTTTTTC 12317 30 100.0 37 .............................. GATATTATAAAAAAACTGTTAGGAGATAGATATTATT 12384 30 100.0 37 .............................. AGAGATAATATATATATGTATGATAATTCTATGCAAA 12451 30 100.0 36 .............................. AAGAAAATACTCCAGCAAATAGAATGCCAAGTTTCT 12517 30 100.0 37 .............................. GAACAAGGCTTTACACTTGGCAAGGATAAAGAAAGAT 12584 30 100.0 36 .............................. TATTTCATCTTTAGCCATATCACCACCCCTTTATTT 12650 30 100.0 36 .............................. TCCTCTATTAAATGAAATTAATTTTGTTAATACAAC 12716 30 100.0 37 .............................. CTTTTTTAATTGTATTTACCATCTGAGTATCATCCTT 12783 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 100.0 37 GTTTACATTCCATTATGGTTCTATTAAAAG # Left flank : TCAGTATCTATTTTTTGTTTGGATTCATAATAGTAAGTGCTTCTAGATAATTGTAGGACTTTGCACATTGCTGATATACTGTATTTGTGAGAGTTGTTTTTAATCACATTTACTTTCGTCCTAATATCAGCGCCGCTTGCTTTAAAATATCATTCTCCATCTTAAGTTTTTGGTTCTCTTTTCTCAATTTAATTAACTCATTTTCCTCCGGAGAGCGATTATCTTTCTCTTTAAATGAACCAGTTTCTTGACTTCTTTTAATCCAAGTATTAAAAGCGGTAGGAGTTAAGTCATACTCAGCAATAATATCTTTTTTAGGCTTACCACTTTCGTATAATTTAACCATTTGTTCCTTAAATTCATCAGTAAAAGTTCTTCTTTGTCTTTTAGTCATACAAACCATTCTCCTTAATATATATTATTGTATTTAGTTTACATGACCTTATTTTTCTTGTCTAGTTTATTGTAGCCTATCCATCTTTTTCCCAAGCGTTATAAGT # Right flank : TTAATGCCCTTTTTTATTTCTGCTATGTTAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACATTCCATTATGGTTCTATTAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 60510-56862 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFU01000008.1 Clostridium sp. D2Q-14 386-72281-9855511, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 60509 30 100.0 36 .............................. GGTCTAAAGCCCGAAGAATTTTGGAGGTTAACACCT 60443 30 100.0 38 .............................. GATGATATTGACTTGACAGATAAAAAGAGTGCACTAGA 60375 30 100.0 36 .............................. TAAGAGCTATTGACGAAGGTTTAAAAAGCAAAGGTT 60309 30 100.0 36 .............................. ATACAGTAACTACAAAAGGACCAGAAGTTATATCTA 60243 30 100.0 36 .............................. TCTAGTGGTACAGTGGATATGATGAGTTGGAGAACA 60177 30 100.0 37 .............................. TTGTCCGGTTTTAACAAAGCTGGTGGATTAGCACAAA 60110 30 100.0 38 .............................. ACATCTGGAATATTGTCAGCTATACCTCAATTAATTAC 60042 30 100.0 36 .............................. GTTTTAATTAAATCTTTAACTATTTGTGATCTTATT 59976 30 100.0 38 .............................. GAGAAAATTAGTAAAAGATCAGTAACTACAGATTCTAG 59908 30 100.0 37 .............................. CCCCAATCCTTTGAATTCATTATGTCTAATTTTTTTG 59841 30 100.0 36 .............................. ACATTCTCTTTTCCGTAATAATCACCGATTCTGATA 59775 30 100.0 36 .............................. GCTAATGATGTTCCTGGATGTCTTTCCATACAATCA 59709 30 100.0 37 .............................. TTACTTCTTTTTGTAACTTTTTGAACATTTGAGTTAC 59642 30 100.0 37 .............................. CTCGTTCCCCAGAAAACACACTGTCTTTTAAATCTAG 59575 30 100.0 38 .............................. TACAAAATGTAAGTAAACTATCTATAGCTTTTTCTGTG 59507 30 100.0 39 .............................. ATTCTTCTATTGCAGTAAGTGAAGTTACTGTCTTACCTA 59438 30 100.0 37 .............................. ATGATAGCTTAGATACAGTTAAAGGAAAGGAAGCCTA 59371 30 100.0 37 .............................. GAAATAAAAATGTATGGTCAAGATTAATTCACTTATA 59304 30 100.0 35 .............................. TTGCATGTATTTTCTCATATGCAGTTGTGTATAGA 59239 30 100.0 38 .............................. CCTGAAAAGGTTTTAAAGTCGGGCTTTGTAAATTGTCA 59171 30 100.0 37 .............................. CTTGATTTATACATAGACCACACATTATTTTTGTAAA 59104 30 100.0 37 .............................. ATCGTTAATTTGCCATTCTCCCGTTCTTTATGTTCTT 59037 30 100.0 38 .............................. ACAGCCATATCTAAAGTTTCTAGTATAAAATCAATATC 58969 30 100.0 36 .............................. TAAGTCATAGCATCATCATATGGAGCTTCTAGTGAA 58903 30 100.0 38 .............................. TCGAGGAAGAGTCTAAAAAACTGCAAAAAGAAATGATA 58835 30 100.0 36 .............................. TTTTCTGGAAAATCCCAAGTCTTGTCTTGGAACCCC 58769 30 100.0 38 .............................. TCCAATAATCAATTATGTCTTTTACTTCATTGTGTTCA 58701 30 100.0 36 .............................. GTATTCAAATGTTATCTGATTTTATATCGTTAGAGA 58635 30 100.0 37 .............................. CTGGATTTGGAGAAGAAGCTCAAAAAAAAGCAGTAGA 58568 30 100.0 36 .............................. CCTAACTTGCTTACGAATGTACCAGGAACTATTGTT 58502 30 100.0 38 .............................. ACAATTTGTGGTGGTTTTGGTTTTTCTTCTTCAAATAA 58434 30 100.0 37 .............................. GGAAATATTGATATTACAAATAAAAATCACTTAGAAG 58367 30 100.0 37 .............................. CTAGAAGATGATGAATCAGAAGGAGAAATACTTGAAA 58300 30 100.0 37 .............................. CATAAGTGATTTCATTGAAGAAGGGGTAAAGTACATA 58233 30 100.0 36 .............................. CCATAGAAGATATGTATATTCTATATCCTTTCATAC 58167 30 100.0 37 .............................. ATTTTAAGAAGTTTTACCATGTTTAATAACCAATTAG 58100 30 100.0 38 .............................. TTTAATTTTATATCGTAATCTTGACTATCAAATTTTTC 58032 30 100.0 37 .............................. TATCTTCCAAAAGGTACATTAAATTCTCCTGATTTAT 57965 30 100.0 37 .............................. TTGTATCCGTTTCATCAAATTTTAATGTTCCGCCATC 57898 30 100.0 37 .............................. TTGGATAATAGAAAAATAAAAAAGAGGAGGAATGTAA 57831 30 100.0 36 .............................. TTCTGATTCTGAATTGCTGCAAAAGTTATCGGTTGA 57765 30 100.0 37 .............................. TCTACCTCTATAGTCGAAGGTATAAAGATAGATAATT 57698 30 100.0 37 .............................. TTTCATTCTCTTCCATAAAACCTAACCACTTCATACA 57631 30 100.0 38 .............................. AATGCAAAATATAAACCATATTCTTGATACCATTCATC 57563 30 100.0 38 .............................. TGCAGATAGTTATGTAGGAAAGTCTACATTTGTAGACC 57495 30 100.0 37 .............................. AAGATAATTTAAAGTGGTTATGGAGAACGGTAGCAGG 57428 30 100.0 38 .............................. TTTTACTCATGCTATCCCTCCAGCTTTTGAAAGTTTAA 57360 30 100.0 37 .............................. TGAATAAATTAATTCCTTTAGCAGAATCTCAAGGAAG 57293 30 100.0 37 .............................. TATAATCTATATCAGACCATGTAAGACCTGCTATTTC 57226 30 100.0 36 .............................. TTGCATCCTTCTACTGTACAAGTTTTCATGTTTATC 57160 30 100.0 38 .............................. AATTCTATATTTAATAAAGTGGACTTAAAGAGTGCTAA 57092 30 100.0 36 .............................. TTCAGTGGTGAAAAAATGTTAATAGTTGAAAACACA 57026 30 100.0 38 .............................. TTGAAAGCTACATTTAAATCAAAATCTTTTAATATAAC 56958 30 100.0 37 .............................. ATCAATGTCAAGGATTATTTTTAAACTCTTTTTCTTA 56891 30 90.0 0 ........................AA..T. | ========== ====== ====== ====== ============================== ======================================= ================== 55 30 99.8 37 ATTGATATAGTACCTATAAGGAATTGAAAC # Left flank : ACGATCTAGATTCTACTAATCATGAAAAAAGAGAACTAGCAAAATCTGTTATGTTTAATGTTAAAGTTATAAGAGAAAATAAAAGAATACTTAAATTAAAAAAAGAATATAAAAGTGTTAATAGAATTAGAAAAAGAATAGCCCATGCTATGCCAGAGGGAAATAAAGCAACATATGTAGATGATATAGATAACTTTAATAATTATTTTGAAACGATAATAAGTATTTTAGACGATAAGAGTATAGAAGAAATTCCAAATAAAGTTTCAATAGAAGAAATAAAAAGATCATATAAGAAGAGATAATAAATTTGTCGTCGATCCCCAATAGCGTGAAAATCCCTGGAGATCGACGACAATTTATTTTTATAAATAAAAATAAACATTTTAGGAATATTACTATAACAGAAGGAAATTTAAAATTAATATAGAATATATATCAATATCATAGTATTCAAGGTATATAAAAAGATAAATGGCTATATACCTATATTTGAGTGG # Right flank : ATATGAAATTAAAGAGTATAATTTTCATAAAGTTATTATAGATGAGATTACTTTAGAATATGATGAAAATTATAAAAGAAATGAAAAAACGGAGGATGTAAATAAATTATTGTCATTATTTAAAGATTTAGAGGTTAAAAAGACAGACAATATCAATCTTAGAGAAAAATATACTCTATTATTAAATGTAATAGCTATATTTGTTTATTTCAATCTTTAAAAGTTATCATTCTGTATATGCTTGATATAATTATGAACATACTTATACTAATTATTATAACTGCTAATATTGTATTCATTTCTATTTTCTCGAGGAATACTAAGAGAATTATTGTAAGTATAAATAGTCTTAAAATATTATATGTAGTATATCTATACTTTTTTAAAAATTTCATACTGTCTTTTTTATCTGTCATTTTTAAACCTCATTTCGTGTATTTATTCTTATATTAATATATGATTATAATTTTATAATTATTATAGTATTCTAACTAAAGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGATATAGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 72249-69805 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFU01000008.1 Clostridium sp. D2Q-14 386-72281-9855511, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 72248 30 100.0 38 .............................. ACATCACCGTTTTCCATGAGGAACTTTTTGATTATTTC 72180 30 100.0 36 .............................. TCATGCTGGGGATGGCAAAAATGGCGAAGGTAATAG 72114 30 100.0 37 .............................. TAGAATTGTAATAGGTCCAAGGGGATGCCTTAAATCC 72047 30 100.0 36 .............................. TAACAGGGTGAATATAATTCTCATCTTCAGTCGTAA 71981 30 100.0 37 .............................. TATAGTCATTCTCAGCCATTCCCTCAATACTTCAAAT 71914 30 100.0 36 .............................. TATTTCGATAGATGTAATAAGGAAACACACGATAAT 71848 30 100.0 37 .............................. AATTCATATTGTGTCATAATAGTAAAAGTAGAAGGGG 71781 30 100.0 36 .............................. TTTGAAACTCTACCTCTATAGTCGAAGGTATAAAGA 71715 30 100.0 38 .............................. TCATATACGACCTTCCCCAAGTCTTCAGAATACCAAGA 71647 30 100.0 38 .............................. GAACTGCCGAAATGATAGCCGTGAATAAATATTGCAGG 71579 30 100.0 36 .............................. TTTTATAAGCTACTGCATTTTCTATAGTAGCTTATA 71513 30 100.0 36 .............................. ATACTCTATAGAAGGCACTAAAACGGTGCTGTTATG 71447 30 100.0 36 .............................. GTTTGAATTTTGGATATTGCTTCTTCATCTTCATCC 71381 30 100.0 36 .............................. ATTTTTTTCCGTCCAATTCCATGATATGACCCTTAC 71315 30 100.0 36 .............................. GATTATATCTGCTAATATTGTACAAAATTCATTTAT 71249 30 100.0 38 .............................. GCTAATTTACTTATTACAGAAGGGTACGAAGAAGAAAA 71181 30 100.0 37 .............................. TATCTAGAATTAGATAACCAATCAAGAAATTTTGACA 71114 30 100.0 38 .............................. CCTTCATAAGCTAAATCAGCTTTTTCTTTAAGCTTGCC 71046 30 100.0 38 .............................. TTGAGCGAATTCAAGAATATGAAGATGGTTTCTTTGCC 70978 30 100.0 38 .............................. ACAAACACGAAAGGGTTAACCAGGGTCAAAGTACTGAA 70910 30 100.0 38 .............................. AATAATTCATCTATATAGAGAATTCTTGCATTTGCTAT 70842 30 100.0 37 .............................. TCCCTAAAAAATAAGATGTAGTCTAAGGCTTTCTTCA 70775 30 100.0 37 .............................. AGACGCAAGTCTCTAGCATTGGCCACGCATAAATATT 70708 30 100.0 36 .............................. ACCCCTCCTTATCTTTCATATAAATCTAAACTCATT 70642 30 100.0 38 .............................. CCCTCCCTGGAATCTCTGTATTTTCTTCAAATATTTTA 70574 30 100.0 38 .............................. CAAACTAATAATAGAAAATCATATTAAACCTGTAATGG 70506 30 100.0 37 .............................. GATTTTTCATATCAGATAGATAAAATGACTCAAGAAG 70439 30 100.0 38 .............................. TAATCTATATTATATTCTTTACAATAGGCTATTAGCTC 70371 30 100.0 37 .............................. AAGAGTATAAACGTATGGCCAAAACTCAAAAGTCAGA 70304 30 100.0 38 .............................. CCTTCTTTAACAGATTGCAATCTACCTTGTTGTAATCT 70236 30 100.0 36 .............................. GATTTTAGTATGTATGTACCTGAAGGGTTTGGAACT 70170 30 100.0 38 .............................. AAGATACTACTAAGGATATTAGTTTAAACCAAGCTATA 70102 30 100.0 38 .............................. TTGTTGATTTATTGATACTTGCCCCTCCATTTAATATC 70034 30 100.0 37 .............................. TAGTATGCTCCAATTAGATAAAGTAAGATATAAGCTA 69967 30 100.0 36 .............................. AGTTTTCATCTCCTGGAAATAATGGAGTGCCAGATA 69901 30 100.0 37 .............................. AAGGAGACCCAAAATCACTAACACCATTATTAAGTAG 69834 30 83.3 0 ........................AA.TCT | ========== ====== ====== ====== ============================== ====================================== ================== 37 30 99.5 37 GTTGATATACTACCTATGAGGAATTGAAAC # Left flank : CTAGCCATCCTTTATATTTTCCTTTAAATCTT # Right flank : TATATTAGTAAACTTTAAATAACATATAAGCTGTACAGACAATAGTACAGCTTATATGTTATTCTTTTATAAAATCTAAAATTATTAAAATTTTACCTATAAAAGATAATGTTTTGTATGAAATAGATGTAATTATATATTTGTATTTGAAATACTTTTTTTAATATTATCAGTGTTAATTGTAGGGATAGGGTATAAGAGATTCTTAAAAATTTTCTTAAAAGAGAAAAAATAAAAATTTCAAAATTAGTAATAAAATAATCATAAAAACTTCATTCGACAAAAATAGACAAAATTCTTTGAAGGATTTATTTATGTCATTATAGAAGTAAGGTTATAAATGTTGAAAAATGTTTAAATTTGGAGGGGAAAATGAAATTATTGTCGATTTTATCTCATGAGCTTACTAATGAACAGAAAAAGGAGTTAAAAGAAAAATATAATGTTAAATGCATAGTGATTTTATCAGAAGAACTGATGTCTTATTGGTCTAATATAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATATACTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //