Array 1 67738-67978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPFW010000014.1 Eggerthella lenta strain J1101653_170612_B5 NODE_14_length_74656_cov_20.401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 67738 34 94.1 35 ......T................G.......... TCGATTGGCTCAAGGCGGCAGACCCGAAGCTTGAA 67807 34 91.2 34 .........C..................C...G. CTCTACGGGATCGAGCCGGTCAAGGCGTCCGGCG 67875 34 100.0 36 .................................. TGGTATCGAAGTCACTGCGCCACAGCCATGCCGACG 67945 34 88.2 0 ..............A.A..T...G.......... | ========== ====== ====== ====== ================================== ==================================== ================== 4 34 93.4 35 GTCGCACCCTCATGCAGGGCGCGTGGATTGAAAT # Left flank : GACTGCTATATTCTTGAGTGAGGATAGCCATATCGGCCTGATCATACCAGGATTCCGCGGCGGCCATGTGCGCGCTGCTTGCCGTATCGGGCGGCTTGTCATCGGCCGAATTTGCACAAAAAGCGTCGACGTTCGATGTTGTGAACGCTCGCGCTTCTTCTTGCCCGCTTGTTCGTCGGCGTTTTCCCTGCACGTTGATTGCGGGGGAGGCTTTGGCTGGGGCGATGGTTGAGCAAAGCATCCAACGTCGGCGATTTTTGTTCAGGAGACGCCCTTTTCGTTGCAGTCATGATGACGGCAGGGCCTTCTTTGCGAAAAGCGGCGGCGGAGGATGCTGCAAATTCGACTGAGTGCGAATCAAAGGCGAACATGATCGATGCGGGAGGTTCGCACCCGATGCGGGATCGATTCGATCGTCGAGGTTGAGACAGTGCGGTTGGCTGCTTGCACGGAATGCAGGATATTGTGCTCGATTCCTTCTCTATGCCATGATCGTTGCG # Right flank : TCGGTTTCGGGCCACTCCGCTCCGCCCCTTCCGCTCTTCGTGTGCAGCAAAAACGAGGTTTTGGCAGTCTTGACCGCTTGGGACGACGTGTTTTCGAGGTCGGGTGCCGTGTTTCCGGGGCGCGGTCGAGTGTCATCTGGGGTTTTGCCGCGGTGCCGTCTCGGGTGCGAGGACTCCTCGTGCCAAAACCTCGTTTTTGCTGCACATCGCCTTGTGAAAACGTGCGGCGGGGCATTTTTCAGGCAGCTGTGGGGGCGGGTTGGGCGCGAAACGGCTCCCATGACAATCGCAAGGCGGCTTCGACCTGCTTTGACGCGCCTTATCGCCTCATGCGGTCGTATGATCCCAGGTGACGAAATCCACGTGCGACCGTCGATACCCGACTCGACCGCCGAAACTGTCATAGGAGCCGTTTCGCGTCCAACCCGCCAACCGCCCGCCAACCCGCCAACCCGTCGACGCAGCGCCTCCCCGCCATCCCTCGCGCAGCTGCGACAGCG # Questionable array : NO Score: 6.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.67, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCATGCAGGGCGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCATGCAGGGCGCGGGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.10,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 30724-34501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPFW010000017.1 Eggerthella lenta strain J1101653_170612_B5 NODE_17_length_63032_cov_19.8184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 30724 33 100.0 33 ................................. CGTATCCCATGGCGTGATGAAAGCGAACGAGGC 30790 33 100.0 34 ................................. CTGAACGACTACGGGCTGCAAGACCTCGTGGGGC 30857 33 100.0 33 ................................. CCCTTTATTACAGGTACATAAACACCGACCGCG 30923 33 100.0 33 ................................. TACTCCGAAACGGAGTACATCCATGACACGGAG 30989 33 100.0 33 ................................. CGACACCTGCGCCTGAGTGTTTCCGATGGTAAG 31055 33 100.0 33 ................................. ACGATCAGCCCGCCGTCTATCCGATGGCGCAGC 31121 33 100.0 33 ................................. CTCATAGTATGCGGGGCGCTGATGCGCGCCCCG 31187 33 100.0 33 ................................. CTCATTGGTGATCTCAATTCCAACCGGCACGAA 31253 33 100.0 34 ................................. TCCAGTATACAGAGCGTTGCGCAAGTTGTCCTGG 31320 33 100.0 33 ................................. CCGTGCTGCGCCCGCCCAATTCCATGAAAAGGC 31386 33 100.0 34 ................................. CAAAACCGAGAGGATGCTCATATCCGACGGCCGC 31453 33 100.0 33 ................................. AGGCCCTTAAAGCCCGCAATTACGACCTGTTGA 31519 33 100.0 34 ................................. ACCTTGTAAAAGCCGTCGATGCGCGCGTACTCGG 31586 33 100.0 35 ................................. TCATATTCATAGATGTTCTCTGGCAGTCCAGGGAG 31654 33 100.0 33 ................................. CACATAGTCACGCCATAATCATCGCGCGAGAGC 31720 33 100.0 33 ................................. TACTTAGTGTGTTATATGCGCCGCAAATACTAT 31786 33 100.0 34 ................................. GGATACGCTCTCATGCATGCATACCCTGTGGCCG 31853 33 100.0 35 ................................. TTGTTGTCGCCGTTCCTCGCGGCAGCCACCTCGGC 31921 33 100.0 33 ................................. CGATGCCGACCACGACGATAGCGCCCATGATGG 31987 33 100.0 32 ................................. GGGCTGACGACCCAAAGAAAAGTCAGCGCCGC 32052 33 100.0 34 ................................. TACTATGTTTACAGTACCGAGGAGCTGAGGCCGT 32119 33 100.0 37 ................................. TTGCCGACGTGCTGGACGGCTACAACCGCACCCACGA 32189 33 100.0 33 ................................. AGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTG 32255 33 100.0 33 ................................. TAAACGAACTTGAACAGACGCATTTTGATAACC 32321 33 100.0 32 ................................. GAGTTCGTTACCGACACGATCGGCCTCATCGG 32386 33 100.0 34 ................................. GAGCTCGCCTGTGTACCCGTCGTTGGTGACGATG 32453 33 100.0 34 ................................. ACGTTGCCCGGATCGAGCTTGAGCGCGCGCTCGA 32520 33 100.0 35 ................................. TCGACGACGGCCCTCACGTCGTCGATGGTGCGGCC 32588 33 100.0 34 ................................. TATCACATGGAGCGGACGAGGTTCTCCGCGCGAG 32655 33 100.0 34 ................................. ATCTTGGGCGTGCCGGGAGCGGGCAAGAGCTTCA 32722 33 100.0 34 ................................. ATGGCGAGTACTTGGACGTAGTTGACGGTCGCCG 32789 33 100.0 36 ................................. ACGTATACGGGCTTCGCGCCGGTGCCGTTGACGTCC 32858 33 100.0 33 ................................. GACAACGCGATGGCCAAGGTATCGACCATCGCG 32924 33 100.0 33 ................................. GATCCGCTACGACAACGTAGGGGATCAGGCCGA 32990 33 100.0 36 ................................. AATGAATCGATCAAGCGCGCCAACGGCGAACTCACC 33059 33 100.0 34 ................................. GAAACCGTGCGCGACGGCGGAAGCAAGCTGGACG 33126 33 100.0 33 ................................. GGAGAAACATATAAAAAGGACGGTGTAATCTCG 33192 33 100.0 35 ................................. CAGTTGATGTCTTTTCGCAGGTCGATGGCGCACGC 33260 33 100.0 34 ................................. AAGCCGACGAATACGCCGGCGAACGCCATTCAGC 33327 33 100.0 34 ................................. AGGCCCTGTCGGCCCGGTCGGCCCTGTCGGCCCC 33394 33 100.0 34 ................................. ATGTCGGCCTTGGTGAACTCGGACAGGTCGAAGC 33461 33 100.0 33 ................................. ATGCTACTAGACGATTTTTTTGTTCCGAAATTG 33527 33 100.0 32 ................................. GGGCTGACGACCCAAAGAAAAGTCAGCGCCGC 33592 33 100.0 34 ................................. TACTATGTTTACAGTACCGAGGAGCTGAGGCCGT 33659 33 100.0 33 ................................. AGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTG 33725 33 100.0 33 ................................. TAAACGAACTTGAACAGACGCATTTTGATAACC 33791 33 100.0 33 ................................. TGGCAGCCTCTCGCAGGGTCTCGGCTGGCTCAA 33857 33 100.0 37 ................................. GAAAAGCTGCACCGGCGTGCCGACCGTGATGCCGTTA 33927 33 100.0 36 ................................. GGCACTGACGTGAACGAAAGCGTCAAGGCTGCAAAC 33996 33 100.0 33 ................................. CCCACCGCGATCACCCAGAACGTCGAGTACCTG 34062 33 97.0 33 .............C................... ATGTCGGGGAAAAGGCGCGAACCCATGTAGGCG 34128 33 100.0 38 ................................. CAGGTAGGCGTTGACGGCCTTGTCGTTGGCCTCGGCCA 34199 33 97.0 33 ..T.............................. CTACGATGCCATGGCGTCCTATGCATTCACGGG 34265 33 97.0 34 ......T.......................... GAGGAATATACGCGATTCGTTGAAACGGATGTAG 34332 33 90.9 36 A.....T...................G...... GGCACCGCGGTGTACTCCGTGCTCGAGAACGCGCGG 34401 32 93.9 34 ..............-.................C TGTTCGGGTTGGCTGGCAAGCTGAACGCTGACAC 34467 33 75.8 0 .....GTT.A..T.....C.C..........G. | T,C [34471,34483] ========== ====== ====== ====== ================================= ====================================== ================== 57 33 99.2 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : GCGCGGCGATCTAGACGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCAGGCCGACGTCGCTTGCGAAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAGCAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAGCCAACGTACGAAGCTGAAGGGTTCTTGGCATTGTAGGACCATGGTGCGAGCACGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTATTGGCGCTATATGTTGATCGAGGCAGTAAATTTTGCGCATAATATTGCG # Right flank : TCGCGCGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCACTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTTCGGCAGGTTCTGTCGCTCCCTAACGAAGGGGCGACCGATCCTTGCCGTCGCTTCCTATCGAGAACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGTCTGCGCCGAGTTGCGAAAGGCGCAGACGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAACTCAAACGTCGTGCAGTCAACCAGGCCGCGGTTCGTCAGGCGCAGTTCGGGCAGGCATGCTAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAAGCATGTACCTTCTCGCTCATCGTTACGGCGTCGAGCGAGTCCATCAAACCGGCGATAGGAAGCTCCACCAACCCCAGGATCTCCCCGTCGGCGACC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //