Array 1 395153-394857 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUA010000001.1 Campylobacter concisus isolate 2009-75775, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 395152 30 100.0 35 .............................. GTTTTGTAGTGCTGTCGTCGATTTCCATATTCCAA 395087 30 100.0 36 .............................. CGTTCAAATGCTGGAGTTAAAAAAAGCTCCACATTC 395021 30 100.0 39 .............................. TAAAATTTTCCATAAGTCCCTGTTACTAAATTAAGCGGC 394952 30 100.0 36 .............................. CTATCTTCTTGTTGATCGCCCTGCTTTTTAGCGTGG 394886 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 100.0 37 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGAGCCTTGAGCCTACATCTCGATCTAGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTTATATTTAATATGCTAAATAAAAAGGAGATCACCGCAAAAGACTTCCAAACGGACGCCGGCAGGATAAAATTTAGCAACGATGCCGTGCAAAAGATCGAGCTAAAGATGCTCTCGCGCCTTTGCGAGACGCTCACGGTGGGTGGCAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCGAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGATTTAGGTGGGAGTGAAATCGCATTTTGATAAAGCGTTTTTTAAGATTTTAAAATGCTTGAAATTTAGGGCTTTGTGTATTTATATGTAGCTAAAATTTAGTCAAATTTAAGGCGAATAAATATAGACTTTTTGCACCAAAAGGCCTATAAATCAACTTTTTGGTGCT # Right flank : AACGCAGAAACGATAAATTTAAAAGTCAAAAATTTTCAGAGAAGAGATTTAAAATAATAGATCAGATAAATAATAATTGCTATCTTGCAAAGATATATCAAACTGATGATAATATAGTTTTATGCAGATACTTCGAAAAACCAAAACCCCAATAAACACAGCAAAAAAAGAAGCTAGAAATAATAACGAAATAGACTAAGCATAAACAAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGTTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCCTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAACTCTTCAATATCGCCATCGGCCAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAATAGTCTTCTAAATTAAATTTAGTAAATTCTTCTTTCATTTATAATCCTTTAAAATTTCTTTTGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 2318-3047 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUA010000015.1 Campylobacter concisus isolate 2009-75775, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2318 37 100.0 38 ..................................... CTAGGGATAGTTCTCTCAGGCATAGGGTAGAACTCTAA 2393 37 100.0 40 ..................................... GAATATAGGCTAGAAGATATTAAAGAAGAGTGGTTGAAAA 2470 37 100.0 37 ..................................... AACCGTTTTTTGGTATATAAATTCATCATAGTTGTTT 2544 37 97.3 39 ................T.................... AGTTTGTCTTCTATAAAACCTTCTCCATCTAGATTAAAT 2620 37 100.0 43 ..................................... TTATTTACGTTGTCAAATTCTCCAGCAGCAAAAGCTGCACCTA 2700 37 97.3 41 ..............C...................... GCAATTCTCAGCGTAAAACTGATAATCTTTTTCATAATCGC 2778 37 97.3 42 ..............C...................... AAGCCAAACTCGTTACGAAGAACTCCAAATAGAGTACTTCTG 2857 37 91.9 37 ..CT.......T......................... ATTTGTCCCTCTTCGTCAGGGTCACCGCAGTGAACAA 2931 37 91.9 43 ..CT.....G........................... TTCATGATGAGTCCTACATTCTCCTCTTTACTAACAAGAACGC 3011 37 94.6 0 ...........T........................T | ========== ====== ====== ====== ===================================== =========================================== ================== 10 37 97.0 40 ATTAGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CACTTCTTTCAAACATCTACCTTGATCAAATGGATAAATTTCTCGAGCATAGCAGTATAGAGTTTGTAAGATACGCAGATGATTTTGTGCTCTTTTTTGGCTCACGTGAAGCCTGCGAGCAAGCGCTTGCCAGACTAAAGGACTTTTTAGTAACCATAAATTTATCCCTAAACGAAGCCAAAACATCCTTGCACGACAAAGATAGCGAATTCACCTTTCTTGGCGTAAATTTCAAAGCTCACGAGCTAAGCATAGGCGAGGATAAATTTGCACGCATCTTAGCAAAACTCATAGCCTCGTCCAAAAAGCCAGAGATCGCCCAAAGCGTAGAGAACATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAAAGTAGTTCTTTTAAAACTCATTGTTAATTTACAATTGTTTTTTGGGCT # Right flank : TAGGTAGGTGCATCTAGCATAGTTCTCAAGCATTAATTCATAGATATATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGCTAAATTGACTATATATGACAATGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCCTCTTTTGCTCTTGGCTTCGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAACTATCTGAAAA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : ATTAGATACAAATTCCCCCGATCTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 4-1610 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUA010000024.1 Campylobacter concisus isolate 2009-75775, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 100.0 40 ..................................... GAGAAGTTGGCGAAACGCCGGAGAGCCGATTTTTATTCGG 81 37 100.0 38 ..................................... AATTTCTACACTAGCTCCCTGAGACAACAAATCAGCAA 156 37 100.0 40 ..................................... ATTCTTTAACCTCTTTTTCTCCAATAGCCTCTAACGTTTC 233 37 100.0 39 ..................................... TTAGTAGTATATTTATACCTACTGTTACTATCTTTATCT 309 37 100.0 35 ..................................... AAATTTCTATATTAGCCCCTTGAGACAATAAATCA 381 37 100.0 37 ..................................... GGTTTTGCCAGAAGCCACAAGTTCTGCAATCTCTCCT 455 37 100.0 39 ..................................... GAACACTAGGTTCCAACTCGAAGAATGCTGGCGCAAAGC 531 37 100.0 35 ..................................... TCCTGCACCATAACTGGACAATGAGCGTAGTGTCC 603 37 100.0 36 ..................................... CAATTAAGGGTAGCAACATTACCGTGTCTGATGGCT 676 37 100.0 40 ..................................... GTAGAGTAAATCCATAGCTAACTGAGTATTTGAGATCAGA 753 37 100.0 35 ..................................... GTTGCTGTGGAGCTGCTTGGCGTTGTTGAGCTGCT 825 37 100.0 36 ..................................... AAGACTATTGCTGCAACGATCCATTCCATAATGGAC 898 37 100.0 40 ..................................... GAAATCTAATTTTTGCATTTATTATCCTTTTAAAAAAAAA 975 37 100.0 34 ..................................... TACTCATAGATGTCATCAGCTTTCTTAGCTTCTA 1046 37 100.0 37 ..................................... TTTGTCAAAAGCTCGATAAGTCTCTCATTTAGGTTCG 1120 37 100.0 36 ..................................... ACTCGGTAAGGCATGAACCTCTCACGATCAGTATCG 1193 37 97.3 40 ....................T................ CATTTTCTTGCTCTTAGAAAAATCACGATAGGGCATAAAA 1270 37 100.0 39 ..................................... GACTTGTTTGTCTCCCTTAGAGACAATGTTATAGAAAGG 1346 37 100.0 38 ..................................... AGAGTTTCCTCAGCAGTAGCGCATTTCACTTGCTTGTC 1421 37 97.3 38 ......................A.............. TCGTGTGTAAAAATACCTGGATAAACTTCTATATTTAC 1496 37 100.0 38 ..................................... TAGCTTACGCTATCCTTAAAGACTCTATACTTACCCCT 1571 37 97.3 0 ....................................T | C,AA [1601,1603] ========== ====== ====== ====== ===================================== ======================================== ================== 22 37 99.6 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : AGAA # Right flank : TTGGTAAAGTTGTAGGTAGTGGCTTATATTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTGGATAAGAACAGATTGGCTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGGTGAGCACGAGCAGATGAGTAAGACCTGCTTGAAGACGATGAAGAAGACTTTGAATAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTATTTTGTTTTGTTGAGTGAATTATAAAGTGACGTATGGACATATTGTGTATAATTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //