Array 1 3085211-3083734 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039595.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014865 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3085210 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3085149 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3085087 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3085026 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3084965 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3084904 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3084843 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3084782 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3084721 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3084660 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3084599 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3084538 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3084477 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3084415 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3084312 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3084251 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3084190 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3084129 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3084068 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3084007 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3083946 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3083885 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3083824 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3083763 29 96.6 0 A............................ | A [3083736] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3102958-3101343 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039595.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014865 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3102957 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3102896 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3102835 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3102774 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3102713 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3102652 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3102591 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3102530 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3102469 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3102408 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3102347 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3102286 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3102225 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3102164 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3102103 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3102042 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3101981 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 3101920 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3101858 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3101797 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3101736 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3101675 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3101614 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3101553 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3101492 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3101431 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3101370 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //