Array 1 318758-317230 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUI01000002.1 Pectobacterium actinidiae strain ICMP 19971 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 318757 28 100.0 32 ............................ AGATGAAGCAACTATCGAACGCCGAAGATGGC 318697 28 100.0 32 ............................ GTCGTCAAAATCTCAATACGATTGGCGATGCT 318637 28 100.0 32 ............................ AAAATTGCCGATCGCAGCCTGAACAGCACGCC 318577 28 100.0 32 ............................ TTGCCGTTTAACTTTTTGATGAGCAAACCGGC 318517 28 100.0 32 ............................ AGCTCGCCCGTTTTGGGGTTAAAGAACACGGC 318457 28 100.0 32 ............................ TGCTGGTTTCTCTTGGGCTGGAAACTGATGCT 318397 28 100.0 32 ............................ GTTATAGCAGTATTGATGCCCGTAGGCCGAAA 318337 28 100.0 32 ............................ AACATCTATCCGTGAGATAGCGAAACACGATA 318277 28 100.0 32 ............................ AGCGTAAAGCACGCGTCTATCCACCGACATCA 318217 28 100.0 33 ............................ GATTAGTTGCGCCAAACGCTGACCTGACGCCAC 318156 28 100.0 32 ............................ CTTGTCGCGATTCTTCCAGTAGCTTACGGCCA 318096 28 100.0 32 ............................ TCATGCAGCAGGATGGCGTCATGATCCATTGC 318036 28 100.0 32 ............................ AGAACGAGGAAATAGTCTTGTTCCAGATTGTC 317976 28 100.0 32 ............................ AAGATGCCGTTACGACCACGGCGGTTGATTTC 317916 28 100.0 32 ............................ TCATCATCAGTCTTGGCGTTAGCCAGACCGTA 317856 28 100.0 32 ............................ AACAAGTAGCAGCAGGCGGAACAACGGCAACT 317796 28 100.0 32 ............................ ACAGGTGATGGTGTTATCTTCGAACACCAGGT 317736 28 100.0 32 ............................ ACTGACATGCGGAATTACAACGAATACTCCAG 317676 28 100.0 32 ............................ ACAGACGACACAGACGCATCGGGCAACGTAAC 317616 28 96.4 32 .......A.................... GTACCGTGCCGTTCCTGGTCGAGCTGGCCAAC 317556 28 100.0 32 ............................ ACAGCGCCACCAGTTCGCTTAACTTGCGATGC 317496 28 100.0 32 ............................ CTAAAACGTGGGGAGGCTCATCACGCAGGGCT 317436 28 100.0 32 ............................ GTGGCCGAGGCCGCAGAGTGGAACGGCAAGGC 317376 28 100.0 32 ............................ CACGCGCCTTGATTCAACGCTGCTTTTTGTGG 317316 28 89.3 32 .G.........T.....T.......... ATGACTGATAATGCGTTGGCTGTGGTATGGGG 317256 27 82.1 0 ...A.........C........-...TG | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCATCCCTGACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGTAGCGCCGAACGGTTACGCCGACGCTCAGTCAGCAAAGGCTGGTTGACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAAATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGATACCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCTGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAACCTTAACG # Right flank : CTTATCAGAATGCGTCGCTGACGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGACTGCCGCCGTGGTTGCGATGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGTGCCGGCATGTCGTCACTCCCCTCATAAGTATGACGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAGAAGCTCTCGAAATCCTGCCGTACCGTAGGGTCAGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACCTGCATCAACCCGACGTTTATCTGGCGCAGTGCAGTAACCTGCACCAATATTTCATCGGTCACCAGATGAAAGCCTCTGGCTTTTGGCTTCAGGCGGATTTCATACTGCGTCCACATCGTCGGCTTCCCTTTATCAGGCTTCACGCGCCAGAATAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 327330-329460 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUI01000002.1 Pectobacterium actinidiae strain ICMP 19971 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 327330 28 100.0 32 ............................ CTAACAATCGCGACTTCCCGGCCGCGTTCATT 327390 28 100.0 33 ............................ GCGCACGTTCAGCGATGCGGGAACGGCGCTCAA 327451 28 100.0 32 ............................ TTATATCCCAGCGCTCGCAACTTTCTGGCCTG 327511 28 100.0 32 ............................ GACAATTTGGTGATCGGTTTCTCATTAGCTAT 327571 28 100.0 32 ............................ TATCTGCCGGTCAGCGATACGGCCAATTTTAC 327631 28 100.0 32 ............................ CGCCTGAGGTGTAACTCCAGCTATTCGGGACA 327691 28 100.0 32 ............................ GCGTGGAGCCTGGTAAATCTGCTTAGGCAATT 327751 28 100.0 32 ............................ CACTCGCGCATCCTGCGGGTTAGCAGTACCGC 327811 28 100.0 32 ............................ ACCAGCGCATACAACGCGCTAAAGGCGAAAAA 327871 28 100.0 32 ............................ ATCCTGCCGACCGGGTGATATTGCATGACCAG 327931 28 100.0 32 ............................ AGTCCAACACCGCCAGCCAACCCCGCGAATTA 327991 28 100.0 33 ............................ GAACAGCCATTTCACCCACTTTGGTGCATCCAT 328052 28 100.0 32 ............................ AACATCGCGGCACGAAACGAGGCACTTTCAGG 328112 28 100.0 32 ............................ AACACCAGAAGCTATCGCGGCACGAAACGAGG 328172 28 100.0 32 ............................ TGAGTATCAGATCACGCCGCTCTACGCCGCAT 328232 28 100.0 32 ............................ AAACATTTTCGCCATCGGGACGGCAACCGAAG 328292 28 100.0 32 ............................ AATCAGCTAATAAATCAACTCATAGCAGGAAA 328352 28 100.0 32 ............................ AGCACCGTGATGACCACGGTAACAAGCTCGCT 328412 28 100.0 32 ............................ ACCAACAGAATTGACTCGAGTTCGATGATGCG 328472 28 100.0 32 ............................ CGGTACTGCGTCGTAACTACACAGCAGACAGT 328532 28 100.0 32 ............................ CCACAGTTGTCTTTCGACACGGCAGCGACTGC 328592 28 100.0 32 ............................ GTAATGCATCATGCGGGTGATTCGATCAAACC 328652 28 100.0 33 ............................ AGTTGTCCGGTAAGGATGGTGCAGCATGAAAAT 328713 28 100.0 32 ............................ GGTGATAATTGATGAACGGGTATCACGGATGA 328773 28 100.0 32 ............................ TATGACGATGCGGATATGGCTCGGGCAATGGC 328833 28 100.0 32 ............................ AACACATTTACAGCGCGAAAAGGCGTTGCCAG 328893 28 100.0 32 ............................ TGGAATAATCCGCTCATCATCCTCTACCAGAA 328953 28 100.0 32 ............................ TGGAAGAAGGCCGCGAATTCGCTGTGCGCGTT 329013 28 100.0 32 ............................ GCGAACGCAAGGCTCAGTCTGTTCAGTGAGGG 329073 28 100.0 32 ............................ GGGATAGATTCCGGCATCACGTCAACGTGGCG 329133 28 100.0 32 ............................ AGATTGTTCACGTACAGCGTAACCGTCAGATC 329193 28 100.0 32 ............................ TGTGAAGGCTGGGACTGCTGTTGGCTCATACT 329253 28 100.0 32 ............................ GGCCGAATCCGAGTCGTATGGACCGTGCATTA 329313 28 100.0 32 ............................ AACTTCAAACTCCCGTTTCCCCCATTTACTTG 329373 28 100.0 32 ............................ TCAAGCCCTCGCGTGTAATCCAGCTCGGCAAA 329433 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGTGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGATACCAGCGAATAAATCGCAGGCTAACTATTTGATAAGAAGAAATATAATCCTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACAGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGAGCGGGCTACA # Right flank : AGTTATCCCACTGCGATTTCACTGCCTATACGGCAGTTCACCTACGACCTTAAGCGCTGCTGTCTGGCTATTATCGAGGTCGCGCTGCACCAAGTACTGAATACGTTTAACCCTTAAATAACACATGTTGATGCCCTTCTTCCGTAACGTTTTTAATTAATGTGTTATTTTTCGGGGAATTAAAAATTGCGTATTAAGCGTTATTCACATTTAAAAACCATAATTTTTCCGTTAAAGTGTTCTTACAGGGAAATAGTACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATCAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTCTAAAGACGTTATGTACACCAAACCCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //