Array 1 5323-5961 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXO02000008.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0056 NODE_8_length_238578_cov_24.356150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5323 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 5384 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 5445 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 5506 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 5568 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 5629 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 5690 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 5751 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 5812 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 5873 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 5934 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22713-25487 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXO02000008.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0056 NODE_8_length_238578_cov_24.356150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22713 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 22774 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 22835 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 22896 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 22957 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 23018 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 23079 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 23140 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 23201 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 23262 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 23323 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 23384 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 23445 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 23506 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 23567 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 23628 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 23689 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 23750 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 23811 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 23872 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 23933 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 23994 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 24055 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 24116 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 24177 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 24238 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 24299 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 24360 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 24421 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 24482 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 24543 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 24604 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 24665 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 24726 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 24787 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 24848 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 24909 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 24970 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 25031 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 25092 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 25153 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 25214 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 25275 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 25336 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 25397 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 25458 29 96.6 0 ............T................ | A [25485] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //