Array 1 284092-288006 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009520.1 Methanosarcina vacuolata Z-761 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 284092 37 100.0 36 ..................................... TATATACTTTGAAACCTATTACTATATACTGAAAGA 284165 37 100.0 36 ..................................... TATTTCTTTTTTAGAAACAGATGACAATTTCCGTGA 284238 37 100.0 37 ..................................... TTCCCCACGCTCGCTGCTGCAATCGGAACAGTCGGTA 284312 37 100.0 36 ..................................... CATCACCATCAACGGCAATATGGACAGCGACTTTTG 284385 37 100.0 38 ..................................... CTACTGTAAGAGAGACTGTGATATACTCGATAAGGCTT 284460 37 100.0 37 ..................................... TAAAAGATCATGGGTTTCGATGGGGGGGGTTTGACGT 284534 37 100.0 34 ..................................... CTTATATGATACTGTAGTATAGTAGTATTGTAGT 284605 37 100.0 35 ..................................... GTTTTAGAAACTGATTTAACTCTACCAGCATATAA 284677 37 100.0 36 ..................................... CCTTCTCCAGTATCCCACTTAGAATCCGATCTGGGA 284750 37 100.0 43 ..................................... CGATCATGACAAAATCAAAAAAGGTTTCTTGGATGGAAAAACA 284830 37 100.0 36 ..................................... TACACTTCTGTCCTTTCTTTGCGCCGGGAATAGCGG 284903 37 100.0 36 ..................................... TACCTGTATATGTTGAAGAAACGGAACCCGAATAAA 284976 37 100.0 36 ..................................... AGAGTATCTAAAACTGTTCGAAAGAATCGGCAATAT 285049 37 100.0 36 ..................................... TAAAATCCAAGTCATCTTGGGATAAACTGATGCTGG 285122 37 100.0 35 ..................................... ACATATTTTCACAATATTGTCCATCATTTGGCCAA 285194 37 100.0 37 ..................................... TCAACTACAAGGAAATTTAACCCCATACTTAAAAAAA 285268 37 100.0 36 ..................................... CAGTCAAGTTTAACGGTAATATTCCGCTTTTACCCT 285341 37 100.0 33 ..................................... AACGACAGGCACTCGCAGATGAACTTGAGAAGT 285411 37 100.0 35 ..................................... AGACCAAACCCAAAACACCAAACCCGATAACCAAT 285483 37 100.0 36 ..................................... GTTACCCAGACTTCCCGAACTCCAGTTCCTACCATC 285556 37 100.0 35 ..................................... TGTTTTCCACCCCTAACGTAACTTTGATCCCTCTT 285628 37 100.0 35 ..................................... ATTAGAGGTTGATAGACTTTGTTTTTCTCTATTAT 285700 37 100.0 36 ..................................... TTATTGACCTCCAGCATACGCTTTTTACGCCGGTGA 285773 37 100.0 33 ..................................... GGATCTGAATTGCCGTATATGGTACAGGGTTAG 285843 37 100.0 35 ..................................... ACGTTGTTGTATGATGCTGTTGCATTTGCGTCGTT 285915 37 100.0 35 ..................................... TTTCTAAAAAATCTGATGAAAGAACCTGTTACCTT 285987 37 100.0 35 ..................................... TCAAATCTGTTAACATTTTTCTCACCTGAAAATTA 286059 37 100.0 46 ..................................... TTTTCTAAAACTCCGCACCACTCACAAACATATGTTTCCATCTTTT 286142 37 100.0 35 ..................................... AATAGCACACCAACTTTAGTAATATTATACATTAA 286214 37 100.0 38 ..................................... CTTATGTAATTCATATTGTGATTGCGATATGTATAATT 286289 37 100.0 37 ..................................... TCGTGTTCATTACATCACCTCCCTGTGTAGTAAATAT 286363 37 100.0 37 ..................................... ATTTCCATCATGAATAATATAATAGATCCATTTTTAT 286437 37 100.0 35 ..................................... CTGTTGGCGCATCTGGAAAAATTACACAAATTGTT 286509 37 100.0 35 ..................................... CTTGCTTTGATGTTTTGATGAGCAAGTGCTCTACT 286581 37 100.0 36 ..................................... TTCAGAGTTCCCGTATCATCGGTTGCTGTTTTAACG 286654 37 100.0 37 ..................................... CATTTGGAAAAAACAGATTGAGAGGGCATTATATGAC 286728 37 100.0 35 ..................................... ATCTGTTGTAATTTTTTATCTCCTGAGCCTTCAGG 286800 37 100.0 34 ..................................... AACCCCCTTCTAATTTTGGAGATCCCCTGGTATA 286871 37 100.0 38 ..................................... CTAAGACTAAGATTGCTGAGTTCTCGGGTATTCCGGTT 286946 37 100.0 35 ..................................... ATCTGTTGTAATTTTTTATCTCCTGAGCCTTCAGG 287018 37 100.0 36 ..................................... TTGTTTGACCGTCCACATCAATCCATGAAATAACAT 287091 37 100.0 35 ..................................... CGTCAGATTCACCTAGAAAAAGGATTTCAGGGAAA 287163 37 100.0 36 ..................................... TTGTTTGACCGTCCACATCAATCCATGAAATAACAT 287236 37 100.0 36 ..................................... CAACCTACCTTATCTGCTATTTCTCGGGTTTTCTGC 287309 37 100.0 35 ..................................... TCGTGATCGAGTACTCGTTTTGCTCCTTTTCGGTT 287381 37 100.0 36 ..................................... CAACCTACCTTATCTGCTATTTCTCGGGTTTTCTGC 287454 37 100.0 35 ..................................... TCGTGATCGAGTACTCGTTTTGCTCCTTTTCGGTT 287526 37 100.0 38 ..................................... TTTAAACAATGTTATGAAATTTGTATGACTTTTTGGGT 287601 37 100.0 35 ..................................... TATTAATAATAGATGATTGCATTAATATTAATAAA 287673 37 100.0 36 ..................................... CATTCAATATAGTCTAATATGTGTTTTCCATCAGCT 287746 37 100.0 38 ..................................... TGTATTATCAGTACCGCTGTCACTACCCGAGCAACCAA 287821 37 100.0 37 ..................................... ACAATATACTCTTCTTGAGCAGTAAGTATACGTTCTT 287895 37 100.0 38 ..................................... ATTACACCATTTTCGAGTTGTGGAACTCTTTTTACAAC 287970 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 54 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TTGTCGCCTATCAGTAGTGTTTTCAGTAATCTCAAATCAGTTAAATAACACGTTTCTGAGAAAACATAATTGTATAGTAATACTTTTTTGATAAAAATTAAGATGAATTAGACTAAACCTGTTTTGCTATAAATACATTCCTAAATATATGTAATACAAATTAGTAATTATATAAAATTAAATAATACAAAATAATATTTAATTCGTTTGTTAGTTTTGGATCAATTCGGGTTCTGGATGAAAAAATAGTTTAAATTTGGTGTTTTTAAAAAATAACTAAAGTATTGCTGGATTAGGTCAGTCTTTGAATCTATTTAAAACGACTTAAAATACAAAAGTTAAATAGAAAGAAAGGCATATACCAGAATGTTTCCAAACTGCTAGAAAACCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCCAAATTGGGCTCATTTCAGGCCTTTTCTAGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTCGAAAAACCGGGATACGGCGAAGCCCGGATATTTTATTCGTGAGAAACAAAGTTTGCACGCATGGAATATGCGAGAGATAGACTTTTTTCAACATTTTATTCATGAGACATACGGGAAGATGGTTTGAAATTTTTAGAAATTGATCTATAGATGACTGTTTGGAGACAATCAAGGTTTTTTTCCACTTTCAGTCATGAAAGAAATTCATTCACATGTTACCTGTTTTGTCCGCTTTAAGGTAATTATTGAAGAGCATTGAATATATTGAATCCATTAGATACATTAGATACATTAGATACATTGGATACATTGGATAGTACTGGATATTATCAGTATTTGAAAACATTATCAACATCATAGTATATTGTTAAACATTAGCGAGTACTCTTAGATGCTATAAACTATTCTTAGATGCTATCGAATATTCTTAAACATTACAGGGTACGATAAGACATTGCTGAATATTATTGGGAATTAATAGCCGTTATTATATGTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 292196-292908 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009520.1 Methanosarcina vacuolata Z-761 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 292196 37 100.0 39 ..................................... TAATTTTATGCCATTATTTATAGCTTGCTGATGTGCATA 292272 37 100.0 37 ..................................... TGTTTGATCTACAATGTTTTGTAGAAATATTTTTATG 292346 37 100.0 34 ..................................... AATAGGTTTATCAAGGTTAACAAAGCGGAATGTT 292417 37 100.0 36 ..................................... TATCAACCTCACGCTGTTGCGTTTTTTGCTTCTTTT 292490 37 100.0 39 ..................................... ACTCATGCCAAGTTACAGCACGAGCGTATACTGCTGCAT 292566 37 100.0 41 ..................................... CCTTTTGGAAGCATCTGGCATCCAGTTCTGAATTCAACATC 292644 37 100.0 38 ..................................... ATAACATTTTCACCTTGAACCAGAAAGTATACCTCTTG 292719 37 100.0 38 ..................................... TCTTCCGATAATGCATCGAGAACAGGGATAGAGTTTTC 292794 37 97.3 41 ..................................G.. AATTTTTTATCTACGGTATAGCGAGCAACATATTGCACGTT 292872 37 97.3 0 ...................................C. | ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 99.5 38 GTCGAAAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Left flank : GAGTCCGAATTCTGGAAGTAAATTACCCCGTTTTCCTCATAAATCACGCTTTTTCTCAACTTTATAAACTAATTTAACAAAAAACAATGTCCTGAGAATCAGTATAAATGATTGTTTTGAATTATCCAAAAAGAAGTTCCAATTTTTCCCTCCGATCCAAAAATTAAAAATCACATTATAGAGGCAGAGTAAAACATTTTAATAAAATTTTAGACTTGCTGCCCACCCTTTACTTTTTTAATAATTTCTTTATAATGACCACGTTTGTTCATTATTAAAAAACTAATCTCAATATAGGACGGTTAAAAATAAAAAAGTTTATATGTTGCTGCTCCTTATATACTATTCAGTTATTTGTCGACCAGCAAATTTTGTTGACCAAAATAAAAACAGGTAAATTTCAAAAATTATCTAGTTCAAGCAAAAAACAATTTGCTCGATATTGATTCTTAAATCAGAGATTGTCTCCGAATTCGCTGAATATAAGGGAAAACGACCCT # Right flank : CAGTTCCTTGCTCTCTGTAGTCGGTTTCTGGGTAAAATAATAAAACAACAACTGCCACTGAAAAACGGATTGAAGTCCTCGCTCGTTTTTATATTTTTGGTTTTATATATCTCAAAAGTCTATTTCTATTAGAAGTAGTTCACGAAAAAGTATCGAGTCCTTTAATTCGGAAAAAAGCCGAATTCTTCGCAGCTAAATATATCAAGTTCCGTAGATGATTGAAAATTAAGAATCATTTACGGAGGTATCTGAGATCCAGAAGCAAAAATTGGCAGAAATTCAATTGAAATTGTACAATAAAGCAAAAAGAAACCCTGGAAAAAGGTTTAAAAAGCTTAAAAAACTGTTTTTGAAAGAAGAAGTTCTTTACACAGCCTGGAAGAATTTAAACCGGAATACAAAAGGCACTGGTTTTGATTCTCTTACTATCCAGCAGGTAGAGGCTTCAGGGGTCGAAAACTTCATCCGTTCAGTAAAGAAAGAGCTTAAAAGTGAAAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 3 734304-734121 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009520.1 Methanosarcina vacuolata Z-761 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 734303 37 100.0 35 ..................................... TTTGCATTTCCTCCTTTTCGAAGAAATTTTTCCTG 734231 37 81.1 37 AG.C.T......T...............A.......T CAAGATAATATCTGTTCATTTCTTCCTCCTAATAACC 734157 37 70.3 0 A.TCGAGA.C.AGA....................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 83.8 36 GTCAAGAGGTAGCTTCCACTAAAATAAGGATTGAAAC # Left flank : GATGCATGGATGGATGAAATAAAGCTATACGGACATGGCCCTGAAAATTGTGATAGTATAGAAATATAATTTTTATGAGAAGTTAAGCTTTACAAAAATTGGGGAATCTAAACTGGACGATACAGGGTTTTATCTTTTTGGTTACGAGAAGAAAATAAATGCAGGGTGAACAGTTTTGAACAATACATGGTCGCGGTGTGTGCAGACAACCCTGGAGCCTTATCGCAGCCGTGAAATGCGTTTTACTGACAGAAATAAGTATCTTTGAATGAACGCAATTGGAGCACAGGATGGCCAGAATATTCTTGAGGTCGGATGTGCCGGAGGTGTGTTCTGTCATAAGTTAAAGCAATATCTTCCCAACATTAAAATAACAGGACTTGATTTTGACACCTGACACGTTTCCTTTGCAAAAAATATCCGCTTAATATAGCCGCATAATACTGTTTTTCAGAGTTGAAGTTACTGAGAATTTGCTGAAAATAAGGAAAAACGAACCT # Right flank : TGCTATACAGATTTTGTTTTCTTGTTGAAAATAGGCCATATCTTTAACAAAAAAGATTATCATTTTGTAGCTGAAATAAGACTAAGTAAAACGTTTTTTCTCATTTATTTGATTCAATATCAAAATTGGTCATAGTACTTGTATACAAAGGTTGGGTATGTGATCAAGGGATGTTGAAAGCCGGCATAGAAGATGATTGAGTGAAGGCCGGATATGATAACAACATTGATAATTGCTACAAGGAGAACTGAGGTCTGTTATGTTACCTTGTGGAGTCACATATCTGATTCCTCAGGGTTTTTTGTTTCAGGATAGGAGACACACTCTGAGATGAGGGATCAGTCCCTTTAAAATTTAAAAGGAAGGTTTTAAGGATGGAGATATACAGGACAGTGGAAGCATTTTATGATGATAATGTGGAATATGAATGGCAGAGGCTAGAGAGACACCGGATCGAATATGAAATAACACGCAGATATCTGGATATTTACATACCCGAA # Questionable array : NO Score: 6.36 # Score Detail : 1:0, 2:3, 3:3, 4:0.19, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAGAGGTAGCTTCCACTAAAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.73%AT] # Reference repeat match prediction: R [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 742145-737419 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009520.1 Methanosarcina vacuolata Z-761 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 742144 37 100.0 34 ..................................... TCTGGACAGCAGCGTCTGAGCATATTTATCTTAC 742073 37 100.0 36 ..................................... TCCATACAGGATACATTATATTCTGTTTAGAATGCT 742000 37 100.0 37 ..................................... TTTAGTGTCTGTTCTGTTAGATTTTCGTTTTTTGCGC 741926 37 100.0 35 ..................................... ATACTGGTGTCAAGGATGAGAGGGGTAATATCTTA 741854 37 100.0 39 ..................................... TATTGTTCAATCAGGTTCCATGCTTCTTCATCTGTCAAT 741778 37 100.0 38 ..................................... AGAAATAAATTAAATTGTTGGGTGGAGAAGCATGGAAA 741703 37 100.0 35 ..................................... GGGGAGAGCCGGTGAATTTGTTACATTTGCGTTTC 741631 37 100.0 33 ..................................... TACCCTCCTTTACCATGTAGCTTCATCGAATCA 741561 37 100.0 35 ..................................... AATGAATTAGTGTAAAAAATGACATTCTCAGCTTC 741489 37 100.0 34 ..................................... CCATTTAAACCGCCTTACCATGTATGAGTTTGAA 741418 37 100.0 35 ..................................... TGCCTTCTAACGTGTGACCGCCTACTGGTATTGAT 741346 37 100.0 36 ..................................... TCACATACATTTAACATCTTAGTACTCCCTGTTTTC 741273 37 100.0 37 ..................................... TTTGGTACGTGTCCTCATCTATTAGTCCTGAATACTA 741199 37 100.0 43 ..................................... AAAACACTTAGTTTTGATAAAACTGTATCTAGAAGAGATGTGT 741119 37 100.0 36 ..................................... TTTTCATTGATTAATTTGACACAAGACCTATCTGTA 741046 37 100.0 37 ..................................... TTACGTTGAGAACCGCTATCACACTACTTTTGGCCTG 740972 37 100.0 37 ..................................... GTGCACACATTCGAATTTAATTTACTTTAACCATTTT 740898 37 100.0 37 ..................................... TCAATAAGATTCTGAATTTTAGTAAGGTCATATTCAT 740824 37 100.0 36 ..................................... AAGGGCTTGATCTGGACAGCGTACCGGTCCCGGATG 740751 37 100.0 37 ..................................... TTTTTATTTTATACTCTTACCTCTAAGATAACTATAT 740677 37 100.0 36 ..................................... TCTGAAGTATAAAACTTATCTTCAGACATTAGAGCT 740604 37 100.0 36 ..................................... ATCAAAAGAAGTTCCGCGTTCCATCGCGGCTTTGTC 740531 37 100.0 37 ..................................... CAAATAATATTGAGGTGTGTAACAATGTTTTCGCTGA 740457 37 100.0 37 ..................................... TTACAAATCTGCAAACGCTTCCGTGTATCTGCATTGT 740383 37 100.0 35 ..................................... CACTATCCAATTGACTTTCTAAAACTTGCCGGCGT 740311 37 100.0 36 ..................................... TGAAGACGCAAATGGTTCGGTTTCGTTGCTTAATGG 740238 37 100.0 36 ..................................... GGTTCTCCTATCTATTTTGAGGTTTTTGATAAGGCC 740165 37 100.0 34 ..................................... CGATCTCTCATATTACAACACCATATTATATCGC 740094 37 100.0 39 ..................................... TTAACTGCATCTTCATATTCAGATTGTGCCTCTGAGACT 740018 37 100.0 39 ..................................... TTTCAACTTCGTCATGCGTTCCATCGCATGTATAATCGC 739942 37 100.0 36 ..................................... ATGGATGCCACAATTAAACTAAAAGCCTACGGAATC 739869 37 100.0 34 ..................................... TAGATTGGTAACTTTCATCCTTTTTGGCATACAC 739798 37 100.0 35 ..................................... TCATACACGTTTACTTTATATTCAGACATTACATT 739726 37 100.0 35 ..................................... AAGCCTGCTGTTGTTCCTGCTGTGTTTGCTGTGTG 739654 37 100.0 37 ..................................... TGTAAACATAGTGCCCATTTGGATCTACTTCGATATC 739580 37 100.0 36 ..................................... GGAGAAGTAGACAGCAGCAGCCTCTTCAACCAGATT 739507 37 100.0 37 ..................................... AAGTTAATGAATCTGGAGATGCTGAATTTTATAAATT 739433 37 100.0 37 ..................................... ATAATGGTCTTAATGTTTCACTTGCTAGAGGTGGGAT 739359 37 100.0 36 ..................................... TGGCGTAGAAGGGGGAGAACGGGGAGTATATTCAGG 739286 37 100.0 35 ..................................... ACTAATTCACATTTCAATTGTTCCATTACTTCTTG 739214 37 100.0 37 ..................................... TTAGATGAGCAAAAACTCCTATCAGGATTCGAACCTG 739140 37 100.0 38 ..................................... TTCCAGCATCTATTCCGACCGATGCGGCGTATATACCG 739065 37 100.0 34 ..................................... CGGTGCTTCAGCAGAAAACGCGGCAGAACCGAAA 738994 37 100.0 37 ..................................... CGCCGATACCATGAATTTCCTCAATTTTTGAGATGAT 738920 37 100.0 36 ..................................... TTTCAGATTTCCCATATCCAATGGGCGAAGCCGAAG 738847 37 100.0 38 ..................................... TATAGTCTCCTCAAAAATTGCATCCCATTCTCTTTTTT 738772 37 100.0 36 ..................................... TCCCTTTGGCTATCATAAGACGTATGGGGAACATGA 738699 37 100.0 36 ..................................... ATCCGAGAAACAATAAGGATAGAACTTGTTTTTCAA 738626 37 100.0 36 ..................................... CACCTAATGAGGGGCATTTAGACCACCCCCAGGCAG 738553 37 100.0 35 ..................................... TATTGCAAAACTTGGTGGTGAACCAAAATTCTGTA 738481 37 100.0 38 ..................................... TTAATATCATAATATCCTGCTGTAGCTCCTGTTTTTTG 738406 37 100.0 36 ..................................... TTGTTTTTGCGGATTCCTTGATCTGTTGTAATTTTT 738333 37 100.0 35 ..................................... CTCTTTAAAGTTAATACTACTATGGATTCTCAGGA 738261 37 100.0 38 ..................................... GGCTTTTTAGCCAGGAGGAATAAAATTCAATGGATCTT 738186 37 100.0 37 ..................................... AAAGGCAAGGCAGGGCACATAGTAGGTTCTGCGTTTA 738112 37 100.0 36 ..................................... TAACCTATGACAAATCGGTAAAAATAAAGGGAGTAA 738039 37 100.0 35 ..................................... TCGATGACTGCATCTCTTGGAAGCTCAATATTTTT 737967 37 100.0 36 ..................................... AAATATATATTTCTTTGATATCCATATTTTGTTCCT 737894 37 100.0 36 ..................................... TTAAAAAATTCATTTCTGAACTACCTTAATTTTGAA 737821 37 100.0 36 ..................................... GGTTCTCCAAATTGTTTTTTAAGTTCTTCTGCTACT 737748 37 100.0 37 ..................................... ATCATCTCGTATTGTTCATCAAAGAGCTTTTGCTCAA 737674 37 100.0 37 ..................................... TACATCCAGTACCGGAACAGCCATCGTCTAGATAACG 737600 37 100.0 34 ..................................... CAGATTTCTGGTATCAGTTCGAAGAAGTTCTTAA 737529 37 100.0 37 ..................................... TTCGAAGTCTGCAATGTACATTGTCAAGTCTATAATG 737455 37 97.3 0 ........................T............ | ========== ====== ====== ====== ===================================== =========================================== ================== 65 37 100.0 36 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GATAGCGACGTATTCATTGCTTCAAAACAGCACCATATAAAGGGAATAGTTGATGAGGTGCTTTTTCTTGAAGACGGGACTGCTGCTCCTCTTGAGTACAAATTTGCCGAGTATAAAGACAAGATTTTTAAAACCTATAAGTTTCAATTGGTTTTACAGGCTCTTTTGATCCGAGAAAATTACAGTATTGAAGTAAACCGTGCTTATATCTGTTTCACCCGAAGCAACAGCCTGGTTAAAGAAATGGAAATTACTACTTCTGATTTCAAAAAAGCTGAGAAAATTATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAAACCACTATCTCTTCTAGAAAATGCGTAGATTGCTGTTACAGGAATATCTGCGTATGAAGAGATTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGGCTTTTCTAGCCAAATAACGGAAATTTTTGCCCT # Right flank : AAATGAACGCATACTTACAAAGAATACTAACAAACATTTTTAGTAAATTCTATTCATTGGTCATCGGTTAAGGAATTTTCTTGTTTGAAAACTATCGATTTTGCATTAGAAGCCGTCCTTAAATTTTGGGCTATTTACGTGAAATCGATACCCTATTCCAGCCCACAACTTATTAAATTATTTAATAGATGTTGAGGAAATCGGTACAATTTTTCACGATTCCCCCCTTAACCGAAGACGCATTAAATTCTATTAGAGTCGATCCTATGTTAAGTTAGATATGTTAATATGCTGTTATAACATATTATAATATATGTCTACCATAGCCATTGACCCAGATGTAAAGGAATCACTTAAAGAATTTAAGATCACAGAAAACGAGTCTTATAATTCCATTATCAAACGGCTCATTGTTAAAGTTAAAGAAACTGCAGAGTATAAACCAATGTTCCCAAAAGAAGAGAACACTGAACGAAGAGAATCACATGTCAAAGATTTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 5 2869678-2870827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009520.1 Methanosarcina vacuolata Z-761 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2869678 32 100.0 31 ................................ AACTCCCATTGGAGAATTACATCTTTTCCAG 2869741 32 100.0 35 ................................ TGGTGGACATGTGGGAAAAGTGCTCTCGGCGGGGC 2869808 32 100.0 34 ................................ ATATAATGACCTCGCCTGGACATACGGTTTTGAG 2869874 32 100.0 36 ................................ TAAGGTAAGAAAATGAGATGTACATATATCCCATTT 2869942 32 100.0 34 ................................ AGGTGAAAAAAGACTACGTATACTTCTTTCTGAC 2870008 32 100.0 36 ................................ TACAATTAAGGGAACGACAGTATCAAACTCTAAATA 2870076 32 100.0 34 ................................ CAATATATAAGATTGATAGAACAGATCCCGCACT 2870142 32 100.0 32 ................................ TGAAATTACGGAGAAAGATATCAAATTCCGTT 2870206 32 100.0 34 ................................ CCTCAACATCCACATAAGAATAAGTCACGGAAGC 2870272 32 100.0 34 ................................ CTCTTTGCAGACCCATCATCCAGTAATTCCAGTT 2870338 32 100.0 34 ................................ TTTACTAGCTGGTGAGATGTGAGATAAAAAACCC 2870404 32 100.0 34 ................................ TTTAAAAGGATTAACTCTTTTAGCTCTTCTATTG 2870470 32 100.0 32 ................................ AGACCGATGCAAGAATAAACTACAGATTATAC 2870534 32 100.0 33 ................................ ACATCATGAAGCAAGATAACACCAGGTATTATT 2870599 32 96.9 33 .....................C.......... ATAAAAAGAGAGGGAAAGGCTTACTAATGGACG 2870664 32 96.9 36 .....................C.......... TGGGTTGAAGGTCAAACCGTTGTCAAGAAACCTTAT 2870732 32 96.9 32 .....................C.......... TACTGCGTCTATACTGGTTACATGGGTCATTT 2870796 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.5 34 GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : CAGTTTTGCACGCAGCATTGATCCAATTTTCCAGCAAGAAGTAACAGTTACTCGTTGTGCCGTCACCAATGAGAAAGATGCTGAAAAAGGTCAGACTATGGGCAAAAAACAGATTGTGCCGTATGGGTTGTATCGCGCAGAAGGATATGTCTCCGCTCATCTGGCTAAAAAGACCGAATTTACAGAAGATGATCTTGAACTTCTCTGGGACAGCCTGGTCAATATGTTTGAGCATGATCATTCGGCAGCAAGGGGAAAAATGTCTGCAAGAAAACTTATTGTTTTCAAGCATAACAGTGAACTTGGCTGCTGTCAGTCTCATGTCCTTTTCGATAAAGTGAAGGTGGAAAGGCTTTCCTGTGATATGCCTTCTCGTTCTTTTGCAGATTATAAAGTAACAATTGCAGATGACATGCCGAATGGTATTGAATTAATTGAGAAATTATGATCGAAAAGAAATATGCCGAAGATGAGTTGCTCTCGTTGTCAGGCATACAACA # Right flank : TTAAAGGAGCGAAAGCGTACCAGGCTTTCTGCCTGCAGACTTCCAGAGCTTCAAATCCGCGTTGAGGTTCTTCAAACACCCTCCGAAACAAAAACATTAAATCTGAAGTTGAGTATGTTTTGGGTTAAGTTAGCGAGCAAAAGACGAGATGAATCACCTATGCCAGTAATTACCTTACAGTACGACGACCTTGAAAAACTCACAGGAACCGATAAGGAAACCATCATAAAAAGAGCGCCCATGATAGGGGCAGATATCGAAAGAGTTGAAGAGGAATCTATAGATATCGAGTTCTTCCCTGACAGGCCTGACCTTTACAGTGTGGAAGGAGCAGCCAGGGCAATGCGGGGTTTTCTGGACCTTGAGACCGGACTGTCCGAATATGAGATAAAGCCGCCCAGGGTTTCGATCTCGGTCAGTGAGGAGATCCTTAGAATCAGGCCTTTTCTTGGGTGTGCGGTTGTAAGGGGCATAAAATTCACATCCTCGTCCATAAAATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 3546206-3545472 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009520.1 Methanosarcina vacuolata Z-761 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================= ================== 3546205 37 100.0 37 ..................................... TAAATTATCTGAAATTGTATATGGTAAAGCAAACGGG 3546131 37 100.0 37 ..................................... TGCCTTCGGGCACTGGTTGATAGTGGCCTGCACCTGA 3546057 37 100.0 38 ..................................... ACTCAAAAAGGATGAATGGCCAGATCGCCAAGATCAAT 3545982 37 100.0 37 ..................................... CAAAAATCTCAAGCGCGTCCCTATCATGTACGTTCAT 3545908 37 100.0 40 ..................................... CCAAAAGAGACATCCGATAGCATTTCACAATGTAAGACAG 3545831 37 100.0 65 ..................................... CGTTTTTGAAAAAAGCATGACTGCGGGGGGCATAAGCACAAATGCCCCCTGTGCCTCTAGGTGTT 3545729 37 100.0 38 ..................................... CTGCCGCCATCGCGATAAGACCGGCCACGACCTGCAGG 3545654 37 100.0 37 ..................................... TTCAGGAACACAAGAACGCAAAGACCAGACTAAACGA 3545580 37 100.0 35 ..................................... CCCAGAAACGGACCATGAAATCGCTCGTTCAGATT 3545508 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================================= ================== 10 37 100.0 41 GTTCCTGAGCTTGTTGTGACGGAACTAGGGTTAGACC # Left flank : AGACTACTTCCATAAGTTGAGCAGGGACGTTATCGAGTATGCCAGATCAAACGAGGTCAAAACGATCGTGATCGGAAACAATCCCGACTGGAAACAGAAAATCAACCACGGGAAGCGAAATAACCAGAACTTCGTGAACATCCCGTTTGCCACGCTGATTCAGATGATCAAGTACAAGGCCGAAGAAGTCGGAATTGACGTCATAGTCAATGAGGAAAGTCATACCTCGAAATGCAGTTTCCTGGATAACGAACCTGTGAAACACCACGAGTCATACGTAGGAAAACGGATAAACAGAGGACAGTTCAGGTCTGCCAGCGGAACTATCATAAACGCAGATTTGAACGGGGCGCTCAATATAATCAAAAAGGCAATCCCGGAAGCTTTTGCAGACGGGATAGAGGATGTCGGGTTACATCCAAAAAGGCATGAAATACTGTCTTTCAAACAATCCAGTTCTAAAATAGCTCAGATGAACGAAAAGAGGGAATTTTTGCCCT # Right flank : CCAACGTGTCCGGACTCGCGAGCAACGTACTCGATGTTCCTGAGCTTGTTGTGACGGTCGGGTTAGACCTGCATGACGACTGTGACCCTTGCCCCGCCCACGGGGTCCTGAGCTTGTTGCGGCGGAATTCAGGCGACGCCCTGGGGGTAGCCCCCACGCCAAGTTGTGTTCGTCTCTGGCAAAAACAGACAAGATTTCAGGAGGGAGTCTGGGCCAACTGTTTACATTTGGAAAAAAGTCCGAGGAATTCTTAAACGCTAAATACTCACGAGATAATATAGGGGTGCAGTACATCGTCAATACTGCACTTCGCCCGCGTGCGTCCGTGCACTCGTGCTTAGTCACCTTGTTGGGTTTCGTCAACCCGTCGTTTCTATCGCTGCGTCTCGTCAACGCAGCAATCAGTCATTCACGGTGCCAACCCTGAATATAAGGCTGACACCGTGAAATTACGTCTGCTTTTGCCTCTAGCCCTGTTCTATCTTATAGCTTGTAGCCCG # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTGAGCTTGTTGTGACGGAACTAGGGTTAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //