Array 1 163341-160810 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLY01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462401, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163340 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163279 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163218 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163157 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163096 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163035 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162974 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162913 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162852 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162791 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162730 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162669 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162608 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162547 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162486 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162425 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162364 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162303 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162242 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162181 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162120 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162059 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161998 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161937 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161876 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161815 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161754 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161693 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161632 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161571 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161510 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161449 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161388 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161327 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161266 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161205 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161144 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161083 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161022 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160961 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160900 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160839 29 93.1 0 A...........T................ | A [160812] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181463-179848 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLY01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462401, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181462 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181401 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181340 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181279 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181218 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181157 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181096 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181035 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180974 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180913 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180852 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180791 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180730 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180669 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180608 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180547 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180486 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180425 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180364 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180302 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180241 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180180 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180119 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180058 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179997 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179936 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179875 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //